Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq93051 363 2e-95 seq116385 172 8e-38 seq30299 102 1e-16 >seq93051 Length=3786 Score = 363 bits (402), Expect = 2e-95 Identities = 589/840 (70%), Gaps = 7/840 (1%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | ||||||||||| | | |||||| || ||||| | ||| |||||||| Sbjct 3316 TTATCAACAGTAAACTGAATAGCATTAGCTGCGGGCTTAGTACGCAAATAATACATACCA 3257 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| || || || ||||| | || |||||||| ||| || || |||| |||| Sbjct 3256 GTTTTAAGCCCGAGTTTCCATGCATAAAAATGCATTGATGTGAGCTTTCCATAATTTGGT 3197 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 || |||| |||||| || | || |||||||| || |||||||| || | ||| || ||| Sbjct 3196 TCCGCTACATGAATGTTAAATGACTGACTTTGGTCAATGAAAGCACCACGATCAGCAGCC 3137 Query 68545 ATTTTTATA-ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATC 68603 |||| || || || | | || |||||||||| ||| || ||| || |||| Sbjct 3136 ATTTGAATTGATGCTTTGAT-AGAGATTTCCCAAACAGTTTTGTAAAGCTCACGTATATT 3078 Query 68604 ATCTGGAAGGCTCG-TATTT--TGAATGGATCCACCATCGGATATAATTATATTCTTGAT 68660 | |||| || ||||| ||||| || |||| | || || ||| ||||| || Sbjct 3077 TGCGGGAATTCTGTCTATTTCTTGAATAGAACCACGTTTAGAAATGATTTCGTTCTTCAT 3018 Query 68661 CTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTG 68720 ||||||| ||| | | | | ||||| ||| || | | | || ||||||| | || Sbjct 3017 ATCATCATCCCATAGATCTATTTCCGTCAAATCTTTCAATAAGTGATGATTAACCACCTG 2958 Query 68721 AAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 68780 || || |||||||| ||||| || | ||||||||| || ||||| || | ||||| Sbjct 2957 GAACTCTCCAGATAAGACTCTGCGGTTATAAATATTAGATGTGTATGGCTCGAAGGATTC 2898 Query 68781 ATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATT 68840 |||||| |||| ||||||||| || || || || ||||| || || | |||| || Sbjct 2897 ATTATTACCCAAAATTTGAGCTGTGGACGCTGTAGGCATTGGAGCAAGTAATAGGGAGTT 2838 Query 68841 TCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTT-CCAATCCCAAAGATCAGATG 68899 ||| | ||||| | | || || ||||| | ||| || ||| ||||| | || | || Sbjct 2837 TCTTACGCCATGCAATTTTATCTTTTCTTTCA-ATGCTTGCCAGTCCCATAAGTCGGTTG 2779 Query 68900 GTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATG 68959 | || ||| | ||| || || |||||||| || ||| | ||| | ||||| Sbjct 2778 GAGTTTTATCCCACATATCATACTGGAGAATTCCTTTGCTTACTGGACTTCCTTCATATG 2719 Query 68960 TTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAA 69019 ||||||| ||||| |||| |||||| ||||||||||| || || | || || || |||| Sbjct 2718 TTTCATATGGTCCATCCTTTTCAGCCAGTTCACAACTAGCTTCAAGAGCTCCATAGTAAA 2659 Query 69020 TTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTA 69079 ||||||| ||||| | | || | ||| |||||| || || | ||| || | | Sbjct 2658 TTGTTTCAAAAATTTGTTGGTTCAACAATTGAGCTTCTTTGCTTTCATAAGGAAAACGCA 2599 Query 69080 AAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTAT 69139 || ||| || ||||| | ||||| ||||| |||||||| ||||||||||||| | || Sbjct 2598 TAATAATCAAAGCATCAGAAAATCCTTGAACACCAATACCTATAGGTCTATGTCGCAAAT 2539 Query 69140 TTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTC 69199 | || | | ||||||||| | ||||||||||| | ||| || ||||| || | ||||| Sbjct 2538 TCGATTTCTTAGCTTCTGGCAATGGATAATAATTTACATCAATGATTTTGTTCAAATTTC 2479 Score = 361 bits (400), Expect = 8e-95 Identities = 687/1005 (68%), Gaps = 26/1005 (3%) Strand=Plus/Minus Query 69265 TTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATT 69324 |||| ||||| ||||||| ||| || ||||| | |||| | | || ||||| || | Sbjct 2243 TTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTACT 2184 Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || ||||| || ||||| || ||||| || || || | ||||| |||||||| || | Sbjct 2183 ATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCTA 2124 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 ||||| || || || || | || | || ||||||||||||| || || ||||| || Sbjct 2123 TTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTATG 2064 Query 69445 GATTTCCAAACGACCCT-----AGCATTTATT--ACGGTCTTGTAACGCTTCTCT--TTT 69495 | ||||| || | ||| || ||| ||||| || | ||| || || Sbjct 2063 G-----CAAACCACAATTGTTGAGCTTTAATTTTACGGT----TAGCTTTTCCCTCCTTC 2013 Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 || |||| | || || || || || |||||||||||||||| | || |||||| Sbjct 2012 TCGTATTTTACGTAGAGATTCTCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACAT 1953 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 | || ||||||||||||||||| | |||||| | | || |||||||| |||| |||| Sbjct 1952 TTATGGGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCG 1893 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttt 69675 |||||||| | ||| ||| |||||||| | || || || || ||||||||||| Sbjct 1892 GGAATCCATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTC 1833 Query 69676 ttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACT 69735 || | || | ||| || | |||||||||||||||||| |||| ||| || || | || Sbjct 1832 TTCAAGTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCT 1773 Query 69736 CCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGC 69795 || |||| ||||||||| |||||||| | ||| | ||| |||||| | ||||| ||| Sbjct 1772 CCGGGTCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGC 1713 Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGA 69855 || || | | ||| ||||| | ||||| ||||| | ||| | | ||| | || ||| Sbjct 1712 ATAGGTACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAGTGCCTTTAGCACGA 1653 Query 69856 ATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTC 69915 || | | | || ||| ||||| || || ||||| || | || || ||| Sbjct 1652 ATGCAATGCACATTTATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCG 1593 Query 69916 AATGTGTCATATATACCCTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGA 69974 | || | | | || || || || ||| || ||||||| ||||||||| || Sbjct 1592 ACTGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGA 1534 Query 69975 CATTTGA---TGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 | |||| || || ||| | |||| || | ||||| || || || | || | Sbjct 1533 TAGTTGAGGGCGAGGTGTAGCTGCCGC---GAACAGGGTAGGTGAAGCATGGATAAAATA 1477 Query 70032 TTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCC 70091 | |||| || | || || ||||| || |||||||| || ||||| ||||||||| Sbjct 1476 TCTTTCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCC 1417 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAA 70151 || | || | ||| | ||| || || |||| ||| | |||| |||||||||||| Sbjct 1416 TACGGACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAA 1357 Query 70152 CAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 | || || ||||| || ||||| ||||| ||||||||| ||| || || || || Sbjct 1356 TAAATAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATA 1297 Query 70212 AATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATC 70256 ||||||| ||||| | | |||| || || |||| ||||| Sbjct 1296 AATAATAGATGAATTCAATCTATCGGCATTCTTTGTAATGATATC 1252 >seq116385 Length=1425 Score = 172 bits (190), Expect = 8e-38 Identities = 364/536 (68%), Gaps = 9/536 (2%) Strand=Plus/Minus Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 ||| |||||||| || || || || || ||| || | ||| || || || || | || Sbjct 584 GGCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACC 525 Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGAT 39738 |||||| | ||| | ||| || | ||| || || || || ||| ||| ||||| || Sbjct 524 AGGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAAT 465 Query 39739 GCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA-TGT--AT 39795 |||||| || || ||||| |||| | |||||| | | | | ||| || || Sbjct 464 GCCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCAAT 405 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| | |||||| ||||| |||||||| |||||||| | | || | ||| || || Sbjct 404 CCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTGAA 345 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 ||| | | | |||| | ||| | || | || ||||| | ||| |||||||| Sbjct 344 GAGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATTTC 285 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 || |||| ||| || || || ||||| || || || ||||| | ||||||||||| || Sbjct 284 CGAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATCTG 225 Query 39976 TACCT-CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 || | ||| ||| | |||| |||| |||||||| || || ||||| |||||| | Sbjct 224 GACTTCCTGGGTGAAA-CGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGCGA 166 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC-- 40092 | || ||||| || || ||| || | || || ||| |||| || | |||||| Sbjct 165 AGAAAGCCAAAACGTGGGAAATGAAGTGCTTCTCTCCGGAATTCAACTTCTCCCAGTCGG 106 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| || || |||| ||| || || || | ||||| ||||| ||||| |||| Sbjct 105 CTTG--GTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGCCT 52 >seq30299 Length=8930 Score = 102 bits (112), Expect = 1e-16 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 163022 TAGAAGGGTTGGTTTTAAAAGATATTAATGGAATATACGAGCCAGGAAAACGTAGATGGC 163081 ||||||| ||||| || ||| ||| || || | || | || ||||||||| | |||| Sbjct 4905 TAGAAGGATTGGTCTTGAAAAATAGAAACGGTCTCTATCAACCCGGAAAACGTGGTTGGC 4964 Query 163082 TTAAAATAAAGAAAGACTACTTGAACAATGGTTCAATGGCAGACTCTGCAGATTTAGTAG 163141 ||||| | || || || || || | | ||| |||||| || |||| ||||| || | Sbjct 4965 TTAAAGTGAAAAAGGATTATTTATGCGAAGGTCAAATGGCTGATACTGCTGATTTGGTTG 5024 Query 163142 TACTTGGGGCATATTATGGAAAAGGAATAAAGGGTGGAATGATGGCTGTCTTTTTGATGG 163201 || | || | || | ||| | |||| || ||||| ||| || | |||||||||||| Sbjct 5025 TATTGGGTGGATGGTTTGGTACTGGAAAGAAAGGTGGTATGCTGAGTATCTTTTTGATGG 5084 Query 163202 GTTGCTATGATGACGAGTCTGGTAAA---TGGAAGACAGTAACTAA 163244 | || |||||| || || || ||| |||||||| ||||| || Sbjct 5085 GATGTTATGAT-ACCAG--AGGGAAATTGTGGAAGACGGTAACGAA 5127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685866596209560