Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq116385 114 1e-20 >seq116385 Length=1425 Score = 114 bits (126), Expect = 1e-20 Identities = 291/435 (67%), Gaps = 11/435 (3%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| || || || || ||| || || ||||||||||| ||||| || || Sbjct 153 GTTTTGGCTTTCTTCGCCGCTTCCGATGGCATTGTCAATGAAAACTTGGTGGAACGTTTC 212 Query 43910 GCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 | || ||||| || |||| | ||||| || ||||| |||||||| || ||||| || || Sbjct 213 ACCCAGGAAGTCCAGATTA-CTGAAGCTCGCTGTTTCTATGGGTTCCAGATTGCTATGGA 271 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACG- 44027 || | || ||||||||||||||| || | || || | |||||| ||| || | Sbjct 272 GAACGTCCACTCGGAAATGTACAGTATTTTAATCGACTCTTACATCCGCGATCCACAGGA 331 Query 44028 -AGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGAC 44086 ||| | || | || || || | || | ||||| | || | || || ||| Sbjct 332 AAGAGACTTC--CTCTTCAACGCTGTCGAGAATCTACCTTGTGTGAAGAAGAAGGCTGAC 389 Query 44087 TGGGCCCTTAAATGGAT--AAATTCAAAT--GATTCTTTTGGAGAACGACTTGTCGCGTT 44142 ||||| | ||||| | | |||| | | |||| || || | | || || Sbjct 390 TGGGCATTGTCTTGGATTGGCAGT-AAATCCGCCACCTTTGCCGAGAGAATCATTGCTTT 448 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 ||| | || |||||||||||||| ||| || || || || || ||||| ||||| Sbjct 449 TGCTGCCGTTGAAGGCATTTTCTTCAGCGGAAGTTTCGCCGCGATCTTCTGGTTGAAGAA 508 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 | |||||||||||||| ||||| || || ||||| | || | | || ||||| | Sbjct 509 GAGGGGTTTGATGCCTGGTTTGACCTTCTCCAATGAACTTATCTCTAGGGACGAAGGACT 568 Query 44263 ACATTGCGATTTTGC 44277 || || || ||||| Sbjct 569 CCACTGTGACTTTGC 583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396868040730895