Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq24307 102 1e-16 seq116385 89.7 6e-13 >seq24307 Length=12971 Score = 102 bits (112), Expect = 1e-16 Identities = 167/237 (70%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 9321 GGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATT 9380 |||||||| |||||||| ||||| || ||| |||| | | ||||||| || | ||| || Sbjct 4299 GGAATCCTTTTCAACCACGAATCTCCTAGAAGAGGAGAAAACTTTGTTACAAGGAAAATC 4358 Query 9381 ACCGAGG---GTATCAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAAC 9437 || ||| || | || | ||| | | || || ||||| | | ||| |||| || Sbjct 4359 ACA-AGGTCTGTGGCTAAAATATCTTTA--GGACAATTGGAGTGCTTCGAACTGGGCAAT 4415 Query 9438 ATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATG 9497 | || | | ||||||||||| ||||| || ||||| ||||| ||||||||| | ||| Sbjct 4416 CTCGACTCCAAAAGAGATTGGGGACACGCCAAAGACTACGTTGAGGCTATGTGGATGATG 4475 Query 9498 CTTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 9554 || ||| || || || || | ||| |||| || || |||||||| ||||| Sbjct 4476 CTGCAATGTGATAAACCCAGTGATTTTGTTATAGCTACTGGAGAGACCCA--CAGTG 4530 >seq116385 Length=1425 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/225 (69%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 122656 ACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGA 122715 |||||||| || |||||| || || || | || ||||||||||| |||||| | | Sbjct 586 ACGGCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAA 527 Query 122716 CCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAG 122775 || ||||| | ||||| |||||||||||| | || ||| ||| ||| |||||| Sbjct 526 CCAGGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAA 467 Query 122776 ATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTT--TGCAT 122833 || || || || ||||| |||| | | ||||| |||| | || || ||| Sbjct 466 ATGCCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGC-- 409 Query 122834 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTA 122878 ||| ||| || |||||| | |||||||||| | ||| |||| Sbjct 408 CAATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTA 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627079126298400