Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq30215 159 4e-34 seq26001 136 4e-27 >seq30215 Length=1837 Score = 159 bits (176), Expect = 4e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || |||||||| | || || ||||| ||||| | ||||||||| | Sbjct 1518 ATCATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACAATTACCTTGGAGGTTGAGCCT 1577 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||| | ||| | |||||||||||||| ||||| || || |||||||||||| Sbjct 1578 TCCGATACCATCGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGAC 1637 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || |||||| | || || ||||| |||||| | || || | |||||| | |||| || Sbjct 1638 CAACAGCGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGTCGTACATTGTCAGATTAC 1697 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||| | |||||||| |||||||||||| | ||| Sbjct 1698 AATATTCAAAAGGAGTCCACTCTTCATTTGGTC 1730 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | |||||||||||||| ||||| || || |||||||||||||| Sbjct 1744 GATACCATCGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAA 1803 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||| | || || ||||| |||||| Sbjct 1804 CAGCGTTTGATCTTCGCTGGAAAGCAA 1830 >seq26001 Length=10617 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || || || || || || ||||| || || || || | Sbjct 8561 AATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAACCTTC 8620 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| | || || || ||||| ||||| ||||||||||||||||| || Sbjct 8621 GGATACTATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCA 8680 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | || || ||||| |||||||| || || | ||||| || | || || || Sbjct 8681 GCAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAA 8740 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| || || ||||||||| |||| | |||||||| ||||| Sbjct 8741 TATCCAAAAAGAGTCTACTCTTCATTTAGTGCTTCGTCTTCGTGGTGG 8788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569445103674480