Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq63354 167 2e-36 seq30215 154 1e-32 seq26001 125 6e-24 seq38947 114 1e-20 seq30299 100 2e-16 seq56330 89.7 4e-13 seq36022 84.2 2e-11 >seq63354 Length=4016 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | ||||| | ||||| ||||| ||| Sbjct 1774 ATGCAGATCTTCGTCAAGACCCTTACTGGTAAGACCATTACCTTGGAAGTCGAACCTTCC 1833 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || ||||||||||| || || ||||| |||||| Sbjct 1834 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAA 1893 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || |||||||||||| | ||| | ||||| |||||| Sbjct 1894 CAACGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGACGCACCTTGTCCGACTACAAC 1953 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| |||||| | || ||||| || Sbjct 1954 ATCCAAAAGGAGTCCACCCTTCACTTGGTGTTGCGTCTCCGTGGTGGTAT 2003 >seq30215 Length=1837 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| || ||| | ||||| | || || || || || Sbjct 1520 CATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACAATTACCTTGGAGGTTGAGCCTTC 1579 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| |||||||||||||||||||| || || || || || Sbjct 1580 CGATACCATCGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCA 1639 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| || || |||||||||||| || || | || |||||||| Sbjct 1640 ACAGCGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGTCGTACATTGTCAGATTACAA 1699 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||||||||| || | |||||||| Sbjct 1700 TATTCAAAAGGAGTCCACTCTTCATTTGGT 1729 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 27039 GAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCA 27098 || || ||||| | || |||| ||||| |||||||||||||||||||| || || Sbjct 1735 GAGCCTTCCGATACCATCGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCT 1794 Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 || || ||||||||||| || | ||| || || |||||||||| Sbjct 1795 CCAGACCAACAGCGTTTGATCTTCGCTGGAAAGCAATTGGAAG 1837 >seq26001 Length=10617 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| || || || || | ||||| || ||||| ||||| || Sbjct 8562 ATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAACCTTCG 8621 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| || |||||||||||||| || || || || ||||| Sbjct 8622 GATACTATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 8681 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| ||||| ||| | |||||| | || ||||||||||||| Sbjct 8682 CAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAAT 8741 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||||| || | ||||| || | ||| | || ||||| Sbjct 8742 ATCCAAAAAGAGTCTACTCTTCATTTAGTGCTTCGTCTTCGTGGTGG 8788 >seq38947 Length=4217 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 135460 GACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCA 135519 ||| ||||| ||||||||| | |||||| || ||| || || |||||||| Sbjct 1461 GACTCATGATGATTTGTGGAACTCTGCACAAATTCAACTTCTAACTGATGGTAAAATGCA 1402 Query 135520 CGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGA 135579 |||||| |||| |||||||||||||||||||| | || ||| || || || | ||| Sbjct 1401 CGGATTCTTGCGAATGTATTGGGCAAAAAAGATTCTTGAGTGGACTAAGTCCCCGGAAGA 1342 Query 135580 GGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAA 135639 ||| || || || || || || |||||| | ||||| | |||||||| ||| |||| Sbjct 1341 GGCTCTTGAAACTGCGATTTTCTTGAATGATAAGTACAGCCTTGATGGACGGGATCCAAA 1282 Query 135640 TGGCTACGTAGGT 135652 |||||| || ||| Sbjct 1281 TGGCTATGTTGGT 1269 >seq30299 Length=8930 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 49824 ACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGC 49883 |||||| ||| | |||| | ||| | ||||| || || || ||||| || ||||| Sbjct 4945 ACCCGGAAAACGTGGTTGGCTTAAAGTGAAAAAGGATTATTTATGCGAAGGTCAAATGGC 5004 Query 49884 CGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGCTT 49943 |||| | ||||||||| || ||||||| ||||| ||| ||||||| || ||||| | Sbjct 5005 TGATACTGCTGATTTGGTTGTATTGGGTGGATGGTTTGGTACTGGAAAGAAAGGTGGTAT 5064 Query 49944 CTTGTCTACATTTTTGATGGGATGTCTCGACACAAACCGAAACGTTTGGACGACAGTAAC 50003 || || ||||||||||||||| || || | | || | |||| ||| ||||| Sbjct 5065 GCTGAGTATCTTTTTGATGGGATGTTATGATACCAGAGGGAAATTGTGGAAGACGGTAAC 5124 Query 50004 AAAGGTGCACACAGG 50018 ||||| || |||| Sbjct 5125 GAAGGTTCATTCAGG 5139 >seq56330 Length=10122 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565 ||||| |||||||| |||||| | | ||||||||||| |||||||| ||||| ||| | Sbjct 2616 GAAGGGAAAATGCATGGATTTTTAAGGATGTATTGGGCTAAAAAGATTTTGGAGTGGGCA 2557 Query 135566 GCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGAT 135625 | ||| |||| ||| || || | | ||||| || |||||| | | ||| || ||| Sbjct 2556 GAATCACCTGAAGAAGCACTTCGAATTGCAATTCACTTGAATGATAAGTTCAGCTTGGAT 2497 Query 135626 GGACGCGATTCAAATGGCTACGTAGGT 135652 || ||| | ||||| ||||| ||| Sbjct 2496 GGTAATGATCCGAATGGTTACGTTGGT 2470 >seq36022 Length=1786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 27096 CCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGT 27154 ||||| | |||| | ||||| || | ||| || || |||||||||||| | || ||| | Sbjct 1195 CCACCAGGTCAAGAACGTTTGATCTTCGCTGGAAAGCAATTGGAAGAC-GAACGCACCTT 1253 Query 27155 TTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||||||||| | ||| | || ||| | |||||| | || ||||| Sbjct 1254 GTCCGACTACAACATCCAAAAGGAGCCCACCCTTCACTTGCTGTTGCGTCTCCGTGGTGG 1313 Query 27215 CAT 27217 || Sbjct 1314 TAT 1316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434258525494080