Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq63354 107 1e-18 seq36022 96.9 2e-15 seq30215 84.2 2e-11 >seq63354 Length=4016 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || || || || |||||||| || ||||| | || |||||| | Sbjct 1773 AATGCAGATCTTCGTCAAGACCCTTACTGGTAAGACCATTACCTTGGAAGTCGAACCTTC 1832 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || | ||| ||||| || || |||||||| || | || || Sbjct 1833 CGACACCATTGAAAAT--GTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGAT 1890 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| || || || || ||||| |||||||| |||| ||||| ||||||||| ||| Sbjct 1891 CAACAACGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGACGCACCTTGTCCGACTAC 1950 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||| ||| | || ||||| |||||| | ||||| || Sbjct 1951 AACATCCAAAAGGAGTCCACCCTTCACTTGGTGTTGCGTCTCCGTGGTGG 2000 >seq36022 Length=1786 Score = 96.9 bits (106), Expect = 2e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 27911 AACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACA 27970 |||| || || || || ||||| |||||||| |||||||||| ||||||||| ||||||| Sbjct 1208 AACGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGAACGCACCTTGTCCGACTACAACA 1267 Query 27971 TCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||| ||| | || ||| | |||||| | ||||| || Sbjct 1268 TCCAAAAGGAGCCCACCCTTCACTTGCTGTTGCGTCTCCGTGGTGG 1313 >seq30215 Length=1837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || || || || || || || ||||| |||||||| Sbjct 1614 GACAAAGAAGGTATTCCTCCAGACCAACAGCGTTTGATCTTCGCTGGAAAGCAATTGGAA 1673 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| || | ||||| |||||||| || ||||| ||| |||| | |||||||| Sbjct 1674 GACGGTCGTACATTGTCAGATTACAATATTCAAAAGGAGTCCACTCTTCATTTGGT 1729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355335970416333