Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq30215 141 2e-28 seq63867 138 3e-27 seq26001 136 9e-27 seq63354 127 5e-24 seq1212 122 2e-22 seq95340 109 1e-18 seq54891 98.7 2e-15 >seq30215 Length=1837 Score = 141 bits (156), Expect = 2e-28 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 225494 GAAGTCTCA--GGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||| |||| |||| | || |||||||| || ||||| | ||||||||| | ||| || Sbjct 1742 GAAGGCTCANAGGACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGT 1683 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | ||||| ||||||||||| | || |||||||| || |||||||| Sbjct 1682 ACGACCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACC 1623 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || ||| ||| |||||||| || || | || || || || Sbjct 1622 TTCTTTGTCTTGAATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAA 1563 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || |||||||| || | ||| | ||||| Sbjct 1562 GGTAATTGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 1521 >seq63867 Length=1872 Score = 138 bits (152), Expect = 3e-27 Identities = 135/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| | || || ||||| ||| |||| ||||| ||| | ||||| Sbjct 1505 CAAATTTATAATGTAATTGTAACTGCCCATGCTTTTATTATAATTTTTTTTATAGTTATA 1446 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| ||||| || || || |||||||| ||||||||||| | || ||||||||| Sbjct 1445 CCTATTATAATAGGAGGATTTGGTAATTGATTAGTTCCTTTAATATTAGGAGCTCCTGAT 1386 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || |||||||| | | || |||||||| |||||| |||| || ||||| ||| Sbjct 1385 ATAGCTTTTCCTCGAATAAATAATATAAGATTTTGAATACTCCCACCTTCTTTA 1332 >seq26001 Length=10617 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||| || |||||||||| ||||||||||| | ||| Sbjct 8783 ACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGT 8724 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| ||||||||||| | || ||| || || || ||||| || Sbjct 8723 ACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCC 8664 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||| ||||| || ||| ||||| || || || | ||| || |||| Sbjct 8663 CTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAG 8604 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||| | ||||||| ||| | ||||||| Sbjct 8603 GGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCATT 8561 >seq63354 Length=4016 Score = 127 bits (140), Expect = 5e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| || ||||| || ||||||| ||||| |||| ||| || Sbjct 1995 ACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 1936 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | ||||| ||||||||||| | |||||||| || || || || || Sbjct 1935 GCGTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCC 1876 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||||||||| ||| ||| ||| |||||||| || | ||| || || || Sbjct 1875 CTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAA 1816 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | || || | ||| | |||||| Sbjct 1815 GGTAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATT 1773 >seq1212 Length=3061 Score = 122 bits (134), Expect = 2e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 7576 GCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGA 7635 || ||||| ||| | || ||||| ||| | ||||| || |||| ||||| || || || Sbjct 616 GCCCATGCTTTTATCATAATTTTTTTTATAGTTATACCTATTATAATAGGAGGATTTGGT 675 Query 7636 AATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAAT 7695 |||||||| ||||||||||| | || ||||||||||| |||||||| | | || ||| Sbjct 676 AATTGATTAGTTCCTTTAATATTAGGAGCTCCTGATATAGCTTTTCCTCGAATAAATAAT 735 Query 7696 ATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 ||||| |||||| |||| || ||||| ||| Sbjct 736 ATAAGATTTTGAATACTCCCACCTTCTTTA 765 >seq95340 Length=3715 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 7598 TCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGA 7657 ||||| | ||||| || |||| ||||| || || || |||||||| ||||||||||| Sbjct 620 TCTTTATAGTTATACCCATTATAATAGGAGGATTTGGTAATTGATTAGTTCCTTTAATAT 679 Query 7658 TTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGC 7717 | || ||||||||||| |||||||| | | || |||||||| |||||| |||| || | Sbjct 680 TAGGAGCTCCTGATATAGCTTTTCCTCGAATAAATAATATAAGATTTTGAATACTCCCAC 739 Query 7718 CTTCCTTA 7725 |||| ||| Sbjct 740 CTTCTTTA 747 >seq54891 Length=5469 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638 ||||| ||| | || ||||| ||| | || || || |||| || || || ||||| ||| Sbjct 3477 CATGCTTTTATCATAATTTTTTTTATAGTAATACCTATTATAATTGGAGGGTTCGGGAAT 3418 Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698 ||||| ||||||||||| | || ||||| |||||||| |||||| | | || ||| || Sbjct 3417 TGATTAGTTCCTTTAATACTCGGAGCTCCAGATATGGCCTTTCCACGAATAAATAATTTA 3358 Query 7699 AGTTTTTGATTACTACC 7715 || |||||| | |||| Sbjct 3357 AGATTTTGACTTTTACC 3341 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/98 (83%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||| ||||| |||||||||||||| | || ||||| ||||| |||| Sbjct 2742 TTCTGGATGACCAAAGAATCAAAATAAATGTTGATATAAAATTGGATCCCCTCCACCTGC 2801 Query 370732 TGGATCAAA-AAAGCTAGTATTAAAATTTCTATCAGTT 370768 || ||||| |||| | ||||||||||||| ||| ||| Sbjct 2802 AGGGTCAAAGAAAGAT-GTATTAAAATTTCGATCTGTT 2838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190676613117026