Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq93051 399 3e-106 seq116385 172 8e-38 seq30299 105 9e-18 seq36631 87.8 2e-12 seq88451 84.2 3e-11 >seq93051 Length=3786 Score = 399 bits (442), Expect = 3e-106 Identities = 601/848 (71%), Gaps = 7/848 (1%) Strand=Plus/Minus Query 76766 TTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTA 76825 |||| | ||||| | ||||||||||| | | || |||||| || ||||| | ||| || Sbjct 3323 TTTACTTTTATCAACAGTAAACTGAATAGCATTAGCTGCGGGCTTAGTACGCAAATAATA 3264 Query 76826 CATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATA 76885 |||||||||||| || || || ||||| | || |||||||| ||| || || ||| Sbjct 3263 CATACCAGTTTTAAGCCCGAGTTTCCATGCATAAAAATGCATTGATGTGAGCTTTCCATA 3204 Query 76886 ACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATC 76945 | | || || |||| |||||| || | ||||||||||| || |||||||| || | ||| Sbjct 3203 ATTTGGTTCCGCTACATGAATGTTAAATGACTGACTTTGGTCAATGAAAGCACCACGATC 3144 Query 76946 AGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTTCCCAAATAGTTTTGAAAACTTGT 77003 ||| ||||||| || || | ||||| || |||||||||| ||||||| ||| | Sbjct 3143 AGCAGCCATTTGAAT--TGATGCTTTGATAGAGATTTCCCAAACAGTTTTGTAAAGCTCA 3086 Query 77004 TTGATATCATCTGGAAGGTT-TGTATTT--TGAATGGAACCACCATCTGATATAATTGTA 77060 |||| | |||| | | ||||| ||||| ||||||| | || || ||| Sbjct 3085 CGTATATTTGCGGGAATTCTGTCTATTTCTTGAATAGAACCACGTTTAGAAATGATTTCG 3026 Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| |||||||||| ||| | | | || || ||| || | | | ||| ||||| Sbjct 3025 TTCTTCATATCATCATCCCATAGATCTATTTCCGTCAAATCTTTCAATAAGTGATGATTA 2966 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || | || || |||||||| || ||||| || | ||||||||| || ||||| || Sbjct 2965 ACCACCTGGAACTCTCCAGATAAGACTCTGCGGTTATAAATATTAGATGTGTATGGCTCG 2906 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | |||||||| || |||||||||||||| || || || || ||||| || || | ||| Sbjct 2905 AAGGATTCATTATTACCCAAAATTTGAGCTGTGGACGCTGTAGGCATTGGAGCAAGTAAT 2846 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | ||||| | ||||| | | || || ||||| | || ||| ||||| | Sbjct 2845 AGGGAGTTTCTTACGCCATGCAATTTTATCTTTTCTTTCAATGCTTGCCAGTCCCATAAG 2786 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || |||||| | ||| || || |||||||| || || | ||| Sbjct 2785 TCGGTTGGAGTTTTATCCCACATATCATACTGGAGAATTCCTTTGCTTACTGGACTTCCT 2726 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 | |||||||||||| ||||| || ||||||| ||||||||||| ||||| | ||||| Sbjct 2725 TCATATGTTTCATATGGTCCATCCTTTTCAGCCAGTTCACAACTAGCTTCAAGAGCTCCA 2666 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480 || ||||||||||| ||||| | | || | ||| ||||| | || ||| | ||| Sbjct 2665 TAGTAAATTGTTTCAAAAATTTGTTGGTTCAACAATTGAGCTTCTTTGCTTTCATAAGGA 2606 Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 || | | || ||| || ||||| | ||||| ||||| |||||||| |||||||||||| Sbjct 2605 AAACGCATAATAATCAAAGCATCAGAAAATCCTTGAACACCAATACCTATAGGTCTATGT 2546 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 | | ||| || | ||||||||||| | ||||||||||| | || || ||||| || Sbjct 2545 CGCAAATTCGATTTCTTAGCTTCTGGCAATGGATAATAATTTACATCAATGATTTTGTTC 2486 Query 77601 AGATTTCT 77608 | |||||| Sbjct 2485 AAATTTCT 2478 Score = 356 bits (394), Expect = 3e-93 Identities = 670/977 (69%), Gaps = 10/977 (1%) Strand=Plus/Minus Query 77672 GTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTAT 77731 |||||| ||||| ||||||| ||| || ||||| | |||| | | ||||| || Sbjct 2244 GTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTAC 2185 Query 77732 TATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTT 77791 ||| || || || ||||| || ||||| || || || | |||||||| || || || | Sbjct 2184 TATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCT 2125 Query 77792 ATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||| || | || ||||| | || | || || || ||||||| ||||| ||||| || Sbjct 2124 ATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTAT 2065 Query 77852 AGATTTCCAGACGACTCTAGCTTTTATCATA-GATTTG-TATCGCCTCTCTCTTTCATAT 77909 | ||| | | |||||| || || | || | | | |||| ||| || | Sbjct 2064 GGCAAACCACAATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCTTCTCGTATTT 2005 Query 77910 TGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTT 77969 | ||| | | | ||||| || |||||||||||||||| | || || |||| || Sbjct 2004 TACGTAGAGATTC--TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATGG 1947 Query 77970 GGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATC 78029 || |||||||||||||| || |||| | | || |||||||| || | ||| || ||| Sbjct 1946 GGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAATC 1887 Query 78030 CATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGA 78089 |||| |||| ||||||||||| | || | || || || |||||||| || || | Sbjct 1886 CATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCAAG 1827 Query 78090 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGT 78149 || | ||| || | |||||||||||||||||| |||| ||| || || | | |||| ||| Sbjct 1826 TCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGGT 1767 Query 78150 CGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGA 78209 | |||||| || |||||||| | |||| | || |||||| | ||||| | ||| || Sbjct 1766 CTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGGT 1707 Query 78210 ATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT--AT 78267 | | ||||||||| || ||||| ||||| | ||| | | || | || ||||| | Sbjct 1706 ACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAGTGCCTTTAGCACGAATGCAA 1647 Query 78268 TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG 78327 | | || ||| || ||||| || || |||||| || | ||||| ||| | || Sbjct 1646 TGCACAT--TTATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGACTG 1589 Query 78328 TATCGTAGATACCCTCTATACTGTCA-TCCATCATGTTAAGAAGAAAACAGCTAGACATT 78386 | |||| || || || |||| || ||||||| ||||||||| || | | Sbjct 1588 ATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGATAGT 1530 Query 78387 TGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCA 78446 ||| | || || |||| || | || || || ||||| |||| || |||| Sbjct 1529 TGAGGGCGAGGTGTAGCTGCCGCGAACAGGGTAGGTGAAGCATGGATAAAATATCTTTCT 1470 Query 78447 GAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCT 78506 || | || || ||||| || |||||||| || || || | |||||||||||| | Sbjct 1469 GATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTACGGAC 1410 Query 78507 ACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTAT 78566 || | ||| | ||| || || |||||||| | | || |||||||||||| || || Sbjct 1409 ACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATAAATAA 1350 Query 78567 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATA 78626 || |||||| || ||||| ||||| ||||||||| ||| || || || ||||||||| Sbjct 1349 GAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAAATAATA 1290 Query 78627 ACAGAATTTAGTTTATC 78643 ||||| | | |||| Sbjct 1289 GATGAATTCAATCTATC 1273 >seq116385 Length=1425 Score = 172 bits (190), Expect = 8e-38 Identities = 359/532 (67%), Gaps = 7/532 (1%) Strand=Plus/Minus Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 ||||| ||||| || || ||||| || ||| || | ||| || || || || | ||| Sbjct 583 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 524 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||| | || | || || | ||| || || || |||||| ||| ||||| ||| Sbjct 523 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 464 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATC 48320 ||||| ||||| ||||| || | | |||||| | | |||| || || ||| Sbjct 463 CCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCAATC 404 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 || |||||| |||||||||||||| |||||||| | | || | ||| || ||| Sbjct 403 CAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTGAAG 344 Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCG 48440 || |||| | |||| | ||| | ||||| || ||||||| ||| |||||||| Sbjct 343 AGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATTTCC 284 Query 48441 GAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGT 48500 ||||| | || || || || ||||| || || || ||||| | ||||| || ||||| Sbjct 283 GAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATCTGG 224 Query 48501 ACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 || ||| || ||||| |||| || ||||| || || ||||| ||| || || Sbjct 223 ACTTCCTGGGTGAAACGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGCGAAG 164 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC--AT 48618 || || || || || ||| || | || || |||| ||| || | |||||| | Sbjct 163 AAAGCCAAAACGTGGGAAATGAAGTGCTTCTCTCCGGAATTCAACTTCTCCCAGTCGGCT 104 Query 48619 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 || || || |||| ||| || || || | ||||| || || ||||| || Sbjct 103 TG--GTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGC 54 >seq30299 Length=8930 Score = 105 bits (116), Expect = 9e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171494 CTAGAAGGTTTGGTTTTAAAGGATATTAATGGTATGTACGAGCCCGGAAAACGTAGATGG 171553 |||||||| ||||| || || ||| || ||| | || | |||||||||||| | ||| Sbjct 4904 CTAGAAGGATTGGTCTTGAAAAATAGAAACGGTCTCTATCAACCCGGAAAACGTGGTTGG 4963 Query 171554 CTTAAAATAAAGAGAGACTACTTGAACGAGGGTTCGATGGCGGATTCTGCAGATCTAGTA 171613 |||||| | || | || || || ||| ||| ||||| ||| |||| ||| | || Sbjct 4964 CTTAAAGTGAAAAAGGATTATTTATGCGAAGGTCAAATGGCTGATACTGCTGATTTGGTT 5023 Query 171614 GTATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATGGCAGTCTTTTTGATG 171673 |||||||| | || | ||| | |||| || ||||| ||| || ||||||||||| Sbjct 5024 GTATTGGGTGGATGGTTTGGTACTGGAAAGAAAGGTGGTATGCTGAGTATCTTTTTGATG 5083 Query 171674 GGCTGTTATGA 171684 || |||||||| Sbjct 5084 GGATGTTATGA 5094 >seq36631 Length=6711 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43295 ATTCCCAATTCCTTGACCTGTGTTAGAGATCGCCAATCCATGTTAGCACTTCCTAAATAA 43354 ||||||| ||||||||| || || | |||| ||| ||||||||||||||||| | ||| Sbjct 1890 ATTCCCAGTTCCTTGACTTGCGTCAACGATCTCCAGTCCATGTTAGCACTTCCAATGTAA 1831 Query 43355 ATATGTCTATTATCTGATATCCAAAATTTAGTATGAAGAACTCCACCT 43402 | ||| |||||| | ||||||| || || || | |||||||||| Sbjct 1830 AAGTGTTGATTATCAGCAATCCAAAGCTTTGTGTGCAAAACTCCACCT 1783 >seq88451 Length=3640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805 |||| |||||| ||||| ||||| | ||| || ||||| || || ||||| | |||||| Sbjct 1644 AAATGCTTTTTTGGTTTCTTTGTGCAAATTCGAAACAGCAATCCTGGCAGCCAAAATAGC 1703 Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865 |||||||| || | || || ||| || || | ||||| || | | | || ||||| Sbjct 1704 ATAATCAGCGTGGTTCGTTGTTAAAGCTGCAGCAGTCTCTGCAGCGAGATTGTCCAACTC 1763 Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 | ||||||||| || | | || || | |||||||| Sbjct 1764 TTGAGTTGTGACTCCGCAAAAAAGGCCATTTATAACTTT 1802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693614822446560