Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq93051 363 2e-95 seq116385 172 8e-38 seq30299 102 1e-16 seq36631 89.7 7e-13 >seq93051 Length=3786 Score = 363 bits (402), Expect = 2e-95 Identities = 593/848 (70%), Gaps = 7/848 (1%) Strand=Plus/Minus Query 75361 TTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTA 75420 |||| | ||||| | || |||||||| | | | ||| || || ||||| | ||| || Sbjct 3323 TTTACTTTTATCAACAGTAAACTGAATAGCATTAGCTGCGGGCTTAGTACGCAAATAATA 3264 Query 75421 CATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATA 75480 |||||||||||| || || || ||||| | || |||||||| ||| || || ||| Sbjct 3263 CATACCAGTTTTAAGCCCGAGTTTCCATGCATAAAAATGCATTGATGTGAGCTTTCCATA 3204 Query 75481 ACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATC 75540 | | || || |||| |||||| || | ||||||||||| || |||||||| || | ||| Sbjct 3203 ATTTGGTTCCGCTACATGAATGTTAAATGACTGACTTTGGTCAATGAAAGCACCACGATC 3144 Query 75541 AGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTTCCCAAATAGTTTTGAAAACTTGT 75598 ||| ||||||| || || | ||||| || |||||||||| ||||||| ||| | Sbjct 3143 AGCAGCCATTTGAAT--TGATGCTTTGATAGAGATTTCCCAAACAGTTTTGTAAAGCTCA 3086 Query 75599 TTGATATCATCTGGAAGATT-TGTATTT--TGAATGGATCCGCCATCAGATATAATTGTA 75655 |||| | |||| | | ||||| ||||| || || | | ||| || ||| Sbjct 3085 CGTATATTTGCGGGAATTCTGTCTATTTCTTGAATAGAACCACGTTTAGAAATGATTTCG 3026 Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| || ||||||| ||| | | | | || || ||| || | | | ||| ||||| Sbjct 3025 TTCTTCATATCATCATCCCATAGATCTATTTCCGTCAAATCTTTCAATAAGTGATGATTA 2966 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || | || || |||||||| || ||||| || | ||||||||| || ||||| || Sbjct 2965 ACCACCTGGAACTCTCCAGATAAGACTCTGCGGTTATAAATATTAGATGTGTATGGCTCG 2906 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | |||||||| || |||||||||||||| || || || || ||||| || || | ||| Sbjct 2905 AAGGATTCATTATTACCCAAAATTTGAGCTGTGGACGCTGTAGGCATTGGAGCAAGTAAT 2846 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | ||||| | ||||| | | || || ||||| | || ||| ||||| | Sbjct 2845 AGGGAGTTTCTTACGCCATGCAATTTTATCTTTTCTTTCAATGCTTGCCAGTCCCATAAG 2786 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | ||| |||||| | ||| || || |||||||| ||||| | ||| Sbjct 2785 TCGGTTGGAGTTTTATCCCACATATCATACTGGAGAATTCCTTTGCTTACTGGACTTCCT 2726 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | ||||||||| || | || ||||||||||| ||||| ||||| || || | || || Sbjct 2725 TCATATGTTTCATATGGTCCATCCTTTTCAGCCAGTTCACAACTAGCTTCAAGAGCTCCA 2666 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || ||||||||||| ||||| | | || | ||| ||||| || ||| ||||| Sbjct 2665 TAGTAAATTGTTTCAAAAATTTGTTGGTTCAACAATTGAGCTTCTTTGCTTTCATAAGGA 2606 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 || | | || ||| || ||||| | | ||| ||||| |||||||| |||||||||||| Sbjct 2605 AAACGCATAATAATCAAAGCATCAGAAAATCCTTGAACACCAATACCTATAGGTCTATGT 2546 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | | ||| || | | ||||||||| | || |||||||| | ||| || ||||| || Sbjct 2545 CGCAAATTCGATTTCTTAGCTTCTGGCAATGGATAATAATTTACATCAATGATTTTGTTC 2486 Query 76196 AGATTTCT 76203 | |||||| Sbjct 2485 AAATTTCT 2478 Score = 347 bits (384), Expect = 2e-90 Identities = 697/1022 (68%), Gaps = 16/1022 (2%) Strand=Plus/Minus Query 76274 GCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCC 76333 ||||| ||||||| ||| || || || | |||| | | | ||||| || ||| || Sbjct 2237 GCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTACTATTTCT 2178 Query 76334 GTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACAT 76393 ||||| ||||| || || || || || || | |||||||| || || || | ||||| Sbjct 2177 GTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCTATTACAA 2118 Query 76394 GAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTC 76453 | || ||||| | | | || || |||||||||| ||||| ||||| || | | Sbjct 2117 GCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTATGGCAAAC 2058 Query 76454 CAGACGACTCTAGCTTTTATTATA-GATTTG--TATCGCTTCTCTCTTTCATATTGTGTA 76510 || | | |||||| ||| || | || | | || || || ||| || || ||| Sbjct 2057 CACAATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCT-TCTCGTATTTTACGTA 1999 Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 | | | ||||| || |||||||||||||||| | || ||||||| || |||||| Sbjct 1998 GAGATTC--TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATGGGGACAC 1941 Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630 ||||||||||| || |||| | | || |||||||| || | ||| || ||||||| | Sbjct 1940 ATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAATCCATAAA 1881 Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690 ||| ||||||||||| | || | || || || |||||||| || || | |||| Sbjct 1880 GCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCAAGTCTAAA 1821 Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTA 76750 || || | |||||||||||||||||| |||| ||| || || | | | || |||| |||| Sbjct 1820 AATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGGTCTTTTA 1761 Query 76751 TTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATG 76810 || || |||||||| | |||| | ||| |||||| | ||||| | ||| || | | Sbjct 1760 TTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGGTACTAAA 1701 Query 76811 CCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT--ATTACTAA 76868 |||||||| || ||||| ||||| | ||| | | || |||||||| | | | | Sbjct 1700 CCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAGTGCCTTTAGCACGAATGCAATGCACA 1641 Query 76869 TAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCAT 76928 | ||| || ||||| || || ||||| || | || || ||| | || | | Sbjct 1640 TTTATA--CCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGACTGATTTAA 1583 Query 76929 AGATGCCCTCTATACTATCA-TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 76987 |||| || || || ||| || ||||||| ||||||||| || | |||| | Sbjct 1582 AGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGATAGTTGAGGG 1524 Query 76988 TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGT 77047 || || |||| |||| ||||| || ||||| | || || |||| || | Sbjct 1523 CGAGGTGTAGCTGCCGCGAACAGGGTAGGTGAAGCATGGATAAAATATCTTTCTGATAAA 1464 Query 77048 AGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGC 77107 || || ||||| || ||| ||| || ||||| | |||||||||||| | || | | Sbjct 1463 AGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTACGGACACTCTC 1404 Query 77108 ATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTT 77167 || | ||| || || |||| ||| | | || |||||||||||| || || || | Sbjct 1403 ATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATAAATAAGAGCGT 1344 Query 77168 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAA 77227 ||||| || ||||| ||||| ||||||||| ||| || || || ||||||||| ||| Sbjct 1343 TCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAAATAATAGATGAA 1284 Query 77228 TTTAGTTTGTCCTTATATTTGGTAACAATATC--CATGACAGTGGTAGAAATAATTGGAG 77285 || | | | || || || |||| ||||| |||||| | |||||| ||||| | Sbjct 1283 TTCAATCTATCGGCATTCTTTGTAATGATATCGTAATGACAAT--CAGAAATCATTGGGG 1226 Query 77286 AT 77287 || Sbjct 1225 AT 1224 >seq116385 Length=1425 Score = 172 bits (190), Expect = 8e-38 Identities = 362/533 (68%), Gaps = 9/533 (2%) Strand=Plus/Minus Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 ||||| ||||| || || ||||| || ||| || | ||| || || || || | ||| Sbjct 583 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 524 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATG 46752 ||||| | || | ||| || | ||| || || || |||||| ||| ||||| ||| Sbjct 523 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 464 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA-TG--AATC 46809 ||||| || || || || || | | |||||| | | |||| ||| || |||| Sbjct 463 CCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCAATC 404 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 || ||||| |||||||| ||||| |||||||| | | || | ||| || ||| Sbjct 403 CAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTGAAG 344 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCT 46929 || |||| | |||| | ||| | || | || ||||||| ||| |||||||| Sbjct 343 AGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATTTCC 284 Query 46930 GAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGT 46989 || || | ||| || ||||| ||||| || || || ||||| | |||||||||||||| Sbjct 283 GAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATCTGG 224 Query 46990 ACCT-CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAA 47048 || | ||| ||| ||||| ||| || ||||| || || ||||| ||| || || Sbjct 223 ACTTCCTGGGTGAAA-CGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGCGAA 165 Query 47049 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC--A 47106 || ||||| || || ||| || | || || ||| | ||| || | |||||| Sbjct 164 GAAAGCCAAAACGTGGGAAATGAAGTGCTTCTCTCCGGAATTCAACTTCTCCCAGTCGGC 105 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| || || |||| ||| || || || | |||||||| || ||||| || Sbjct 104 TTG--GTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGC 54 >seq30299 Length=8930 Score = 102 bits (112), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 170062 CTAGAAGGTTTGGTTTTAAAAGATATTAATGGTATATATGAGCCAGGAAAACGTAGATGG 170121 |||||||| ||||| || ||| ||| || ||| | ||| | || ||||||||| | ||| Sbjct 4904 CTAGAAGGATTGGTCTTGAAAAATAGAAACGGTCTCTATCAACCCGGAAAACGTGGTTGG 4963 Query 170122 CTTAAAATAAAGAGAGACTACTTGAATGAGGGTTCGATGGCGGATTCTGCAGATTTAGTA 170181 |||||| | || | || || || || ||| ||||| ||| |||| ||||| || Sbjct 4964 CTTAAAGTGAAAAAGGATTATTTATGCGAAGGTCAAATGGCTGATACTGCTGATTTGGTT 5023 Query 170182 GTATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATGGCAGTAT--TTTTGA 170239 |||||||| | || | ||| | |||| || ||||| ||| || ||||| |||||| Sbjct 5024 GTATTGGGTGGATGGTTTGGTACTGGAAAGAAAGGTGGTATGCTG--AGTATCTTTTTGA 5081 Query 170240 TGGGTTGCTACGATGACGACTCTGGTAAA---TGGAAGACTGTAACTAA 170285 |||| || || ||| || | || ||| |||||||| ||||| || Sbjct 5082 TGGGATGTTATGAT-AC--CAGAGGGAAATTGTGGAAGACGGTAACGAA 5127 >seq36631 Length=6711 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 41822 ATTCCCAATTCCTTAACCTGTGACAGAGATCTCCAATCCATATTAGCACTTCCTAAATAA 41881 ||||||| |||||| || || | || |||||||| ||||| ||||||||||| | ||| Sbjct 1890 ATTCCCAGTTCCTTGACTTGCGTCAACGATCTCCAGTCCATGTTAGCACTTCCAATGTAA 1831 Query 41882 ATATGCATATTATCAGATATCCAAAATTTTGTGTGAAGAACTCCACC 41928 | || |||||||| ||||||| |||||||| | ||||||||| Sbjct 1830 AAGTGTTGATTATCAGCAATCCAAAGCTTTGTGTGCAAAACTCCACC 1784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711852709193280