Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq63354 140 2e-28 seq30215 109 4e-19 seq26001 105 5e-18 seq36022 82.4 5e-11 >seq63354 Length=4016 Score = 140 bits (154), Expect = 2e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGT 44183 |||||||| |||||| ||| |||||||||||||||||| |||| | || || || ||| Sbjct 1986 CAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTG-CGTCCGT 1928 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | |||| ||||| || || ||||||||||| || ||||||| || | || || || | Sbjct 1927 CTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCTTTGT 1868 Query 44244 CCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| ||| | || | |||||||||| | ||| || |||| ||||| | Sbjct 1867 CTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAAGGTAATGG 1808 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || |||||||| |||||||| ||||| Sbjct 1807 TCTTACCAGTAAGGGTCTTGACGAAGATCTGCAT 1774 >seq30215 Length=1837 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| ||| ||||||||| || |||||||| | | | || |||| ||| Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCC 1670 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| || || |||||||||||||| || |||| ||| | |||||| || || Sbjct 1669 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGA 1610 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||| | | | ||||| |||| | || ||||||| ||||| ||||| Sbjct 1609 ATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTA 1550 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || | ||||| ||||| || ||||||||| Sbjct 1549 CCAGTCAAAGTCTTGACGAAAATCTGCATGATG 1517 >seq26001 Length=10617 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 44135 TGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGC 44194 ||||| || ||| |||||||| |||||||||| || || |||| || || ||| Sbjct 8764 TGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTCAAGTTGC 8705 Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || || || |||||||| | |||||||||| ||| | || || || || ||||| Sbjct 8704 TTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTG 8645 Query 44255 TGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 |||| || ||| | || || || | | ||| || || | ||||| || || ||||| Sbjct 8644 -GCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAATGGTTTTACCCGT 8586 Query 44314 GAGGGTCTTCACGAAGATTTGCATGATGTGAA 44345 |||||| || ||||| |||||||| |||||| Sbjct 8585 GAGGGTTTTTACGAAAATTTGCATTCTGTGAA 8554 >seq36022 Length=1786 Score = 82.4 bits (90), Expect = 5e-11 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGT 44183 ||||| || |||||| ||| |||||||||||||||||| |||| | || || || |||| Sbjct 1299 CAACAGCAAGTGAAGGGTGGGCTCCTTTTGGATGTTGTAGTCGGACAAGGTG-CGTTCGT 1241 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | |||| ||||| || || ||||||||||| | ||| ||| Sbjct 1240 CTTCCAATTGCTTTCCAGCGAAGATCAAACGTTCTTGACCTG 1199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359457863838843