Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq23535 118 1e-21 >seq23535 Length=11542 Score = 118 bits (130), Expect = 1e-21 Identities = 201/286 (70%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223 ||| | ||| | |||||||||||| |||||||| ||||| || | || | || ||| || Sbjct 3820 AAAAAGTCGACGGACGTTAGCTTCTGATTCACCAACATACTTATCCAAAATTTGAGGTCC 3879 Query 156224 GTTAACTATTTTGACGGGTCGTG-ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATG 156282 || || ||||| ||| | ||| || | || | || |||||||| | | Sbjct 3880 ATTCACAATTTTTGGCTCTCGAGCATTCAACATATTTC-CAATTTGACGAGCCATAAGAG 3938 Query 156283 TTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAATT 156342 | ||||| ||||||||||| |||||||| | |||||| | ||||||||| || |||| Sbjct 3939 TCTTACCAGTTCCAGGAGGTCCATATAACAAAATTCCTTTGACATGTTTACAGCCCAATT 3998 Query 156343 TTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAG-AA 156401 ||| | ||| |||| || ||| || ||||| |||||||| || || | Sbjct 3999 GCTCAACCAGTTCAGGTGGAAAGACTCGGGATGCGAATGCCCTTCGAAATAT-AGCGTTG 4057 Query 156402 AATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447 ||||||||||||||||| || | ||||||| |||| | ||||| Sbjct 4058 AATTCTTTATCCAATCCGCCAATTCCCATTTTACCAAAGTCCCAAT 4103 Score = 113 bits (124), Expect = 6e-20 Identities = 229/333 (69%), Gaps = 14/333 (4%) Strand=Plus/Plus Query 155730 CGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAA 155789 ||| ||| || || |||||||| || | || || ||||| | || ||||| ||| || Sbjct 3319 CGATTCATAGCTGTAGATTGAGCCGCTCTCACTAAACCTTCTATCTCCGCGCCACTGAAA 3378 Query 155790 TTTTTAGTTTCAACG--GCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAG 155847 || ||||| ||| | || |||| || ||||| |||| || ||| | || ||| Sbjct 3379 TTCTTAGT--CAATGTTGCGATTTCCTTATTATCTACATCGGGTGC-AATTTTTT-TGAA 3434 Query 155848 ATTTC--ATT---TTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGG 155902 || || ||| || | | || | || | |||||| | || || ||||| || Sbjct 3435 ATCTCGCATTCGTTTTGTA---TGAATCTGCATAATTTGTACTCGACCAGCTTCATTAGG 3491 Query 155903 TAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAA 155962 || | ||||| || | || |||||| |||||||| | | ||| ||||| ||||| | Sbjct 3492 CAAACTGATTTCCATTTGCACTTCCAATCGCCCAGGCCGAAGTAAAGCTTCATCAATCAT 3551 Query 155963 GTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTAT 156022 || ||| || ||||| || || | | |||||||||||| ||| |||||||| || Sbjct 3552 ATCCCGTCGATTTGTCATTCCAATTACAAGAATGTTGTTTAATTGTTCCACACCGTCAAT 3611 Query 156023 TTTAGACAATAATTGATTGACTACGGCGTCGTG 156055 || | || |||||||||||| || | |||||| Sbjct 3612 CTTTGCCAGTAATTGATTGACGACTGTGTCGTG 3644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666063088491240