Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq26001 159 8e-34 seq30215 105 2e-17 >seq26001 Length=10617 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| || ||||| || ||||| || || ||| || || Sbjct 8565 CAAATTTTCGTAAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAACCTTCGGAT 8624 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| |||||||| |||||||| ||||| ||||| || |||||| Sbjct 8625 ACTATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAA 8684 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || || ||||| || | |||||| ||||||| || || Sbjct 8685 AGATTGATCTTCGCTGGCAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAATATC 8744 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| || || || ||| Sbjct 8745 CAAAAAGAGTCTACTCTTCAT 8765 >seq30215 Length=1837 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || || || || || ||| | ||||| || || || Sbjct 1524 CAGATTTTCGTCAAGACTTTGACTGGTAAGACAATTACCTTGGAGGTTGAGCCTTCCGAT 1583 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| || ||||| ||||||||||| || ||||| ||||| || Sbjct 1584 ACCATCGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAACAG 1643 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| || | ||||| || | || | | ||||| || | Sbjct 1644 CGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGTCGTACATTGTCAGATTACAATATT 1703 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || || || ||| Sbjct 1704 CAAAAGGAGTCCACTCTTCAT 1724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201859195230526