Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7579 96.9 3e-15 >seq7579 Length=34747 Score = 96.9 bits (106), Expect = 3e-15 Identities = 372/577 (64%), Gaps = 13/577 (2%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| | || || | || || ||||| ||| | |||||||| || ||||||||| Sbjct 14030 GGGGATTTGGGGCCAGTCTATGGATTCCAATGGCGTCATTTTGGGGCAGAATATAAAACT 14089 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 ||||| |||||| | | |||||| | ||||| || | ||| || | | ||| Sbjct 14090 TGTCATGACGACTATTCAAACCAAGGAGTTGATCAATTGAATGATGTCATTCAAAGAATC 14149 Query 18909 AA-AACAAACCCAGAAAGCCGAC-GAATGAT---TATATCGTCTTGGAATCCAAAGGATA 18963 || || || || | | ||| ||| ||| ||| || ||||||| ||| |||| Sbjct 14150 AAGAATAATCCTA-----CGGACAGAAGGATCTGTATGTCAGCTTGGAACCCAGTGGATC 14204 Query 18964 TCCCCTTAATGGTACTACCTCCATGTCACACGTTATG-TCAGTTTTACGTTGCAAACGGT 19022 | || ||||| | |||| || ||||| ||| || ||| ||||| ||| | | | | Sbjct 14205 TTCCAAAAATGGCATTACCACCTTGTCATT-GTTTTGCTCAATTTTATGTTCAAGATGAT 14263 Query 19023 GAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAAC 19082 || ||||| || | ||||| || || | ||| | || || || || || ||||| Sbjct 14264 GAGTTATCATGTTTGATGTACCAAAGGTCTGCTGATGTTGGGCTCGGAGT-CCTTTCAAT 14322 Query 19083 ATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGA 19142 ||||| | || || | | || || || | || ||| | || || ||| ||| Sbjct 14323 ATTGCAAGTTACGCTTTATTGACTTATATGATTGCTCATCTCTGTGGTCTCAAAGTTGGA 14382 Query 19143 GATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAA 19202 || || |||| | | ||||| | ||| | || ||||||| | ||| |||| ||| Sbjct 14383 GACTTTGTTCACAGTTTTGGGGACACTCATGTCTATAAGAATCATGTTGATCCTTTGAAA 14442 Query 19203 GTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACA 19262 | ||||| || |||| |||||| || || | |||| || || || Sbjct 14443 GAACAGCTTAAAAGAGTTCCAAGACCTTTCCCAAAGCTGATCATTAACCGTAAAGTCGAG 14502 Query 19263 GATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccc 19322 | || | ||||| |||| || ||||| |||| || || ||||| | || | Sbjct 14503 AAAATCGAGGACTTCAAATTTGAAGATTTCACTATTGAAGGTTACGATCCATATCCAACT 14562 Query 19323 cTAAAAATGGAAATGGCTCTTTAATGGATTTTTAAAT 19359 | |||||||||||||| |||||| |||||| || Sbjct 14563 ATTAAAATGGAAATGGCCGTTTAATATTTTTTTATAT 14599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398379071767845