Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq194783 244 8e-60 seq188621 217 1e-51 seq7579 197 1e-45 >seq194783 Length=813 Score = 244 bits (270), Expect = 8e-60 Identities = 438/631 (69%), Gaps = 8/631 (1%) Strand=Plus/Plus Query 101639 AGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTT-AAGAGCATCAATGTGATC 101697 ||| |||| || ||||| ||| || ||||||||| | || | |||| ||||| Sbjct 71 AGTTTTGGGAAAGGTCTTGGAACTCTTGTCAACTGCTCTGCCAATGGAATCAC-GTGATT 129 Query 101698 TACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGAC 101757 || | ||||| |||||| || |||||| ||| || ||| || |||| ||| Sbjct 130 CTTGTAAACGTGAGTATCTCCAATGTTATGGACAAAATCACCAACTCTTAAATTACAGAC 189 Query 101758 ATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCC 101817 |||||||||||| |||||| | || |||||| ||||| || ||||| |||||||| | Sbjct 190 ATGAGCAATCATATGAGTTAACAAAGCATAGCTGGCAATATTGAATGGAACTCCTAAAGC 249 Query 101818 CATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTG 101877 |||||| | | |||||| |||| ||| ||||||| ||||| |||||||| || Sbjct 250 CATATCTCCAGCTCTTTGGTACAAAGAACAAGAAAGCTCTCCATTTTGAACATAAAACTG 309 Query 101878 -ACTTAATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCA 101935 || || || |||||| || || | ||||||| |||||||| | ||||||||| Sbjct 310 TAC--AAAACTATGACATGGTGGGAGGGCCATTTTTGGAATGTCCACAGGATTCCAAGCT 367 Query 101936 CACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAAT 101995 ||| | |||||||| || | || || ||||| || || | || | | | || Sbjct 368 GTCATGCAAATCCTTCTGTCATTTGGATTGGTTTTAATTGTGTGGATTACATTGCTCAAC 427 Query 101996 TGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGC 102055 |||||||| |||| ||| |||||||| | | ||| ||||| || |||||||| Sbjct 428 TGGTCAACGCCTTTTCCAGTATAATCGTCGTGACAAGTTTTGTATTCAGCCCCGAAATGA 487 Query 102056 CTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGT 102115 | ||| ||||| ||||| || ||||| | |||||||| |||||||| || |||| | Sbjct 488 CGCCATTGAAAGCCATATACTGGTCCCAAGTCTCCTTCTTCTCTGTCTGTAAGACCACAT 547 Query 102116 TTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACG-CCAGCTGCTGATAG 102174 |||||||| || ||| | | ||| ||| ||| || | | | | | ||| || Sbjct 548 TTATCTAAGAAATCTCTTGTGCAATTGTCATTCCAGATCTTAATGTTCTTGTCTTGA-AG 606 Query 102175 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCA 102234 | || | ||| ||||| | ||||||||||||||||||||| ||| | ||||| Sbjct 607 TACCTTAACATTAGTTTGACCTCTCACAAACCACAACAGTTCTTCAACTACAGCCCTCCA 666 Query 102235 AAATACTCTCTTAGTAGTTAAAAGTGGAAAT 102265 || ||||| || || || || | |||||| Sbjct 667 GAAGACTCTTTTTGTGGTCAACAAAGGAAAT 697 >seq188621 Length=750 Score = 217 bits (240), Expect = 1e-51 Identities = 389/562 (69%), Gaps = 6/562 (1%) Strand=Plus/Minus Query 101707 GTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAAT 101766 ||||| |||||| || |||||| ||| || ||| || ||| |||||||||||| Sbjct 650 GTGAGTATCTCCAATGTTATGGACAAAATCACCAACTCTTAAGTTACAGACATGAGCAAT 591 Query 101767 CATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGC 101826 ||| |||||| | | |||||| ||||| || ||||| ||||| || ||||||||| | Sbjct 590 CATATGAGTTAACAAAACATAGCTGGCAATATTGAATGGAACTCCCAAACCCATATCACC 531 Query 101827 TGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTG-ACTTAATA 101885 | |||||| |||| ||| ||||| | ||||| |||||||| || || || | Sbjct 530 AGCTCTTTGGTACAAAGAACAAGAAAGTTCTCCATTTTGAACATAAAACTGTAC--AAAA 473 Query 101886 C-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAAC 101944 | |||||| || || | |||||||||| ||||| | ||||||||| ||| | Sbjct 472 CTATGACATGGTGGAAGGGCCATTTTAGGGATGTCCACAGGATTCCAAGCTGTCATGCAA 413 Query 101945 ATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACT 102004 |||||||| || | || || ||||| || || | || | || |||| |||||||| Sbjct 412 ATCCTTCTGTCATTTGGATTGGTTTTAATTGTGTGGATTACATGGCTTAACTGGTCAACG 353 Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064 |||| || ||||||| | | ||| ||||| || || ||||| | ||| ||| Sbjct 352 CCTTTGCCAGTATAATCATCATGACAAGTTTTGTATTCAGCCCCAAAATGACGCCATTGA 293 Query 102065 AATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAA 102124 || ||||| || ||||| | |||||||| ||||| || || |||| ||||||||| Sbjct 292 AAGCCATATACTGGTCCCAAGTCTCCTTCTTCTCTATCTGTAAGACCACATTTATCTAAG 233 Query 102125 AATGATCTAGATCCATTCGCATCCCAAATGTGCACG-CCAGCTGCTGATAGCTCTTTGCT 102183 || ||| | | ||| ||| ||| || | | | | | ||| || | || Sbjct 232 AAATCTCTTGTGCAATTATCATTCCAGATCTTAATGTTCTTGTCTTGA-AGTACCTTCAC 174 Query 102184 GTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCT 102243 | || ||||| | ||||||||||||||||||||| ||| | ||||| || ||||| Sbjct 173 ATTGGTTTGACCTCTCACAAACCACAACAGTTCTTCAACTACAGCCCTCCAGAAGACTCT 114 Query 102244 CTTAGTAGTTAAAAGTGGAAAT 102265 ||||| || | | |||||| Sbjct 113 TTTAGTGGTCAGCAAAGGAAAT 92 >seq7579 Length=34747 Score = 197 bits (218), Expect = 1e-45 Identities = 433/646 (67%), Gaps = 7/646 (1%) Strand=Plus/Minus Query 101643 TTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACAT 101702 |||| || ||||| ||| || | | ||| ||| | || ||||| |||| || Sbjct 14476 TTGGGAAAGGTCTTGGAACTCTTTTAAGCTGTTCTTTCAAAGGATCAACATGATTCTTAT 14417 Query 101703 AGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACT---AGATTAGTGACAT 101759 ||| |||| || || | | | || | ||| |||||| ||| ||| | || || Sbjct 14416 AGACATGAGTGTCCCCAAAACTGTGAACAAAGTCTCCA---ACTTTGAGACCACAGAGAT 14360 Query 101760 GAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCA 101819 |||||||||| |||| || | || || || ||||| || || || ||||| | ||| | Sbjct 14359 GAGCAATCATATAAGTCAATAAAGCGTAACTTGCAATATTGAAAGG-ACTCCGAGCCCAA 14301 Query 101820 TATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGAC 101879 |||||| || ||||| |||| ||| || | || |||| |||||||||||| Sbjct 14300 CATCAGCAGACCTTTGGTACATCAAACATGATAACTCATCATCTTGAACATAAAATTGAG 14241 Query 101880 TTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACA 101939 || ||||||||| || || ||||||| |||| || |||||||| ||| Sbjct 14240 CAAAACAATGACAAGGTGGTAATGCCATTTTTGGAAGATCCACTGGGTTCCAAGCTGACA 14181 Query 101940 TTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGT 101999 | | |||||||| || ||||| || | || || | | ||| | | || ||||| | Sbjct 14180 TACAGATCCTTCTGTCCGTAGGATTATTCTTGATTCTTTGAATGACATCATTCAATTGAT 14121 Query 102000 CAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCC 102059 ||||||||| | ||| ||| | | |||||||||||| || ||||| | || Sbjct 14120 CAACTCCTTGGTTTGAATAGTCGTCATGACAAGTTTTATATTCTGCCCCAAAATGACGCC 14061 Query 102060 ACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTAT 102119 | || |||||||| || || || | ||| ||||| || || ||| ||||||| ||||| Sbjct 14060 ATTGGAATCCATAGACTGGCCCCAAATCCCCTTCTTCCCTATCAGTAAAACCACATTTAT 14001 Query 102120 CTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTT 102179 | || ||| || | | || ||||||| || | |||| | || || || Sbjct 14000 CCAAGAATTCCCTGGTGCTGTTTCCATCCCATATTTTCACGTTTTTTTCTTGTAAAATTT 13941 Query 102180 TGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATA 102239 || | ||| ||| |||| ||||| | |||||||| ||||||||||||| |||| Sbjct 13940 TGGCATTAGTTTGACCTTTGATGAACCAAAGAAGTTCTTCTGCAACACCTCTCCAGAATA 13881 Query 102240 CTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTCTAAACTAAACCT 102285 | || || |||||||| | |||||| | || | | | ||||||| Sbjct 13880 CCCTTTTTGTAGTTAATAATGGAAACTGATCTCTGAGATTAAACCT 13835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360233984468291