Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq54449 378 8e-100 seq11307 86.0 7e-12 >seq54449 Length=2482 Score = 378 bits (418), Expect = 8e-100 Identities = 676/969 (70%), Gaps = 25/969 (3%) Strand=Plus/Plus Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 53763 ||| || || || | |||||||||||| | |||| | | | | ||| | || || || Sbjct 1284 TGCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTC 1343 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 |||||| |||||||||||||| || || || | ||||||||||||||||||| |||| || Sbjct 1344 AGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCA 1403 Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883 ||||| || || | || |||| || |||||||| | || || || ||||| || | Sbjct 1404 AGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATA 1463 Query 53884 CCAGACGACACGAGCCTTTATTATAGA-TTTGTATCTCTTTTCTCTTTCGTATAGTGTAT 53942 ||||| |||| |||||| | |||| | || || | |||| || ||| Sbjct 1464 CCAGAGTTGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCAT-TTTCATACTTAATAT 1522 Query 53943 ACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 54002 | | | ||||| || || |||||||||| || |||||| ||||||| | ||||||| Sbjct 1523 AGAGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACA 1582 Query 54003 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 54062 | | ||||| ||| ||||| ||| || ||||||||||| | ||| |||||||| | || Sbjct 1583 TAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAG 1642 Query 54063 C-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 54121 | || ||| |||||||| | || | || || |||||||| || || || | ||| | Sbjct 1643 CGTAGAAA-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAA 1701 Query 54122 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTG 54181 || | | |||||| |||||||| |||||||| || || | | ||||||||| ||| Sbjct 1702 AATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTG 1761 Query 54182 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 54241 || ||||| ||||||| |||| || ||||| | ||||| ||||| |||| | | Sbjct 1762 TTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAA 1821 Query 54242 CCATTGGATGCACCATTGGTCCCGGAGATATAGC--TTCCACTGGCACGAATA----TTA 54295 ||||| || | ||||| || || || ||||| | || | || |||||| || Sbjct 1822 CCATTTGAAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTA 1879 Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355 | ||| || || || || ||||| || || || | || ||| | || |||| | Sbjct 1880 C--ATT--TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACGGA 1934 Query 54356 -TCATAGATGCCCTCTAT--ACTATCATC-CATCATGTTAAGTAGAAAACAGCTAGACAT 54411 | |||| || ||||| | | | | | ||| |||| || |||||||| ||||| Sbjct 1935 CTTGAAGATCCCTTCTATGGAATCTGAGCACAT--TGTT-AGAAGAAAACATGAAGACAA 1991 Query 54412 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 54471 ||| | | || | ||| |||||| || ||||| ||||| |||| | |||| Sbjct 1992 TTGAGGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTC 2051 Query 54472 AGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 54531 ||| | ||||| || ||||| ||||||| ||||| || | |||||||||||| || Sbjct 2052 AGATAAAAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGC 2111 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 ||| | ||| | |||||| |||||||||||| | || || ||||| |||| | || Sbjct 2112 GACTCTCATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATA 2171 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 || ||||| |||||||| ||||| || |||||| ||| ||| || ||||| || Sbjct 2172 TGAGCGCTCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGAT 2230 Query 54652 AACTGAGTT 54660 | ||| || Sbjct 2231 AGATGAATT 2239 Score = 334 bits (370), Expect = 9e-87 Identities = 654/961 (68%), Gaps = 24/961 (2%) Strand=Plus/Plus Query 52793 TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTAC 52852 |||| ||||| | |||||||| || | | || |||||||| ||||||| ||||||| Sbjct 263 TTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTAC 322 Query 52853 ATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAA 52912 ||||| ||||| ||||| | |||| |||| |||||||| |||| ||| ||| Sbjct 323 ATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAG 382 Query 52913 CTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCT 52972 | || ||||||| ||| ||||| | || ||||||||||| || || || || || || Sbjct 383 TTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCA 442 Query 52973 GCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTT 53031 |||||||||| || | | ||| |||| |||||||||| ||||||||||| | | Sbjct 443 GCAGCCATTTGAATTGTAG-ATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCT 501 Query 53032 AATATCTTCTGGAA-GGTTTGTATT--CTGAATAGATCCACCATCTACCATAATCCTATT 53088 |||| | |||||| ||| ||| || ||||| |||| | | ||||| || Sbjct 502 GATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTT 561 Query 53089 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 53148 || || ||||| | |||||| | ||| ||||| | | || | ||| | || || Sbjct 562 TTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTAC 621 Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||||| || || ||||| ||||||| || | |||||||| ||||| ||||| | Sbjct 622 AACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAA 681 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || ||||| ||||||||||||||||||||||| ||||| ||||| ||||| | |||||| Sbjct 682 TGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAA 741 Query 53269 ACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 |||||| | || ||| | | |||||||| ||||||| || ||||| ||| | | Sbjct 742 TGAATTTCTTACTCC--ATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAA 799 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGA 53382 || | || ||||| || || || ||||| | Sbjct 800 TCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCT---- 855 Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 53442 ||| ||||||| || || | || || || ||||| ||||||||||| || || | || Sbjct 856 TCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGC 915 Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCA 53500 || |||||||| || || || || | || ||| || || || || || || || Sbjct 916 TCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCA--CTTTCG 973 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 | |||||| | ||||| || || || | || ||||| ||||| || |||||||| Sbjct 974 TAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGC 1033 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 || || | ||| || || |||||| || | ||||||||||||| |||||| ||| Sbjct 1034 CTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTATT 1093 Query 53621 TTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATT-- 53678 || || | |||||| || | ||| || || |||| ||| | |||||| ||| Sbjct 1094 TTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCATATTTA 1153 Query 53679 -GTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCA 53737 | || | ||| | || || | ||| || || || | |||||||||||| | ||| Sbjct 1154 CGATCAGCAGTTATATACTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCA 1213 Query 53738 T 53738 | Sbjct 1214 T 1214 >seq11307 Length=4647 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54772 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 54831 |||| ||| || ||||||||||||| || || || || |||||||| |||| || || Sbjct 3747 AAATGCTTTCTTAGTTTCTTTGTGTAAGTTGGAAACAGCAATTCTAGCAGCTAAGATAGC 3806 Query 54832 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891 |||||| | ||||| ||| || |||| ||||| |||| || | ||| | |||| ||| Sbjct 3807 ATAATCTGCATGTTTTGTGGTCAAAGTTGCTGCCGTTTCAGCGGCGAGATTATCCAGTTC 3866 Query 54892 TACCGTTGTTACTCC 54906 | || ||||| || Sbjct 3867 TTGAGTCGTTACACC 3881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592006924597680