Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 378 8e-100
seq11307 86.0 7e-12
>seq54449
Length=2482
Score = 378 bits (418), Expect = 8e-100
Identities = 676/969 (70%), Gaps = 25/969 (3%)
Strand=Plus/Plus
Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 53763
||| || || || | |||||||||||| | |||| | | | | ||| | || || ||
Sbjct 1284 TGCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTC 1343
Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823
|||||| |||||||||||||| || || || | ||||||||||||||||||| |||| ||
Sbjct 1344 AGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCA 1403
Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883
||||| || || | || |||| || |||||||| | || || || ||||| || |
Sbjct 1404 AGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATA 1463
Query 53884 CCAGACGACACGAGCCTTTATTATAGA-TTTGTATCTCTTTTCTCTTTCGTATAGTGTAT 53942
||||| |||| |||||| | |||| | || || | |||| || |||
Sbjct 1464 CCAGAGTTGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCAT-TTTCATACTTAATAT 1522
Query 53943 ACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 54002
| | | ||||| || || |||||||||| || |||||| ||||||| | |||||||
Sbjct 1523 AGAGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACA 1582
Query 54003 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 54062
| | ||||| ||| ||||| ||| || ||||||||||| | ||| |||||||| | ||
Sbjct 1583 TAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAG 1642
Query 54063 C-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 54121
| || ||| |||||||| | || | || || |||||||| || || || | ||| |
Sbjct 1643 CGTAGAAA-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAA 1701
Query 54122 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTG 54181
|| | | |||||| |||||||| |||||||| || || | | ||||||||| |||
Sbjct 1702 AATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTG 1761
Query 54182 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 54241
|| ||||| ||||||| |||| || ||||| | ||||| ||||| |||| | |
Sbjct 1762 TTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAA 1821
Query 54242 CCATTGGATGCACCATTGGTCCCGGAGATATAGC--TTCCACTGGCACGAATA----TTA 54295
||||| || | ||||| || || || ||||| | || | || |||||| ||
Sbjct 1822 CCATTTGAAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTA 1879
Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355
| ||| || || || || ||||| || || || | || ||| | || |||| |
Sbjct 1880 C--ATT--TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACGGA 1934
Query 54356 -TCATAGATGCCCTCTAT--ACTATCATC-CATCATGTTAAGTAGAAAACAGCTAGACAT 54411
| |||| || ||||| | | | | | ||| |||| || |||||||| |||||
Sbjct 1935 CTTGAAGATCCCTTCTATGGAATCTGAGCACAT--TGTT-AGAAGAAAACATGAAGACAA 1991
Query 54412 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 54471
||| | | || | ||| |||||| || ||||| ||||| |||| | ||||
Sbjct 1992 TTGAGGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTC 2051
Query 54472 AGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 54531
||| | ||||| || ||||| ||||||| ||||| || | |||||||||||| ||
Sbjct 2052 AGATAAAAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGC 2111
Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591
||| | ||| | |||||| |||||||||||| | || || ||||| |||| | ||
Sbjct 2112 GACTCTCATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATA 2171
Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
|| ||||| |||||||| ||||| || |||||| ||| ||| || ||||| ||
Sbjct 2172 TGAGCGCTCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGAT 2230
Query 54652 AACTGAGTT 54660
| ||| ||
Sbjct 2231 AGATGAATT 2239
Score = 334 bits (370), Expect = 9e-87
Identities = 654/961 (68%), Gaps = 24/961 (2%)
Strand=Plus/Plus
Query 52793 TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTAC 52852
|||| ||||| | |||||||| || | | || |||||||| ||||||| |||||||
Sbjct 263 TTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTAC 322
Query 52853 ATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAA 52912
||||| ||||| ||||| | |||| |||| |||||||| |||| ||| |||
Sbjct 323 ATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAG 382
Query 52913 CTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCT 52972
| || ||||||| ||| ||||| | || ||||||||||| || || || || || ||
Sbjct 383 TTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCA 442
Query 52973 GCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTT 53031
|||||||||| || | | ||| |||| |||||||||| ||||||||||| | |
Sbjct 443 GCAGCCATTTGAATTGTAG-ATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCT 501
Query 53032 AATATCTTCTGGAA-GGTTTGTATT--CTGAATAGATCCACCATCTACCATAATCCTATT 53088
|||| | |||||| ||| ||| || ||||| |||| | | ||||| ||
Sbjct 502 GATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTT 561
Query 53089 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 53148
|| || ||||| | |||||| | ||| ||||| | | || | ||| | || ||
Sbjct 562 TTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTAC 621
Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208
||||| || || ||||| ||||||| || | |||||||| ||||| ||||| |
Sbjct 622 AACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAA 681
Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268
|| ||||| ||||||||||||||||||||||| ||||| ||||| ||||| | ||||||
Sbjct 682 TGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAA 741
Query 53269 ACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326
|||||| | || ||| | | |||||||| ||||||| || ||||| ||| | |
Sbjct 742 TGAATTTCTTACTCC--ATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAA 799
Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGA 53382
|| | || ||||| || || || ||||| |
Sbjct 800 TCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCT---- 855
Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 53442
||| ||||||| || || | || || || ||||| ||||||||||| || || | ||
Sbjct 856 TCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGC 915
Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCA 53500
|| |||||||| || || || || | || ||| || || || || || || ||
Sbjct 916 TCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCA--CTTTCG 973
Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560
| |||||| | ||||| || || || | || ||||| ||||| || ||||||||
Sbjct 974 TAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGC 1033
Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620
|| || | ||| || || |||||| || | ||||||||||||| |||||| |||
Sbjct 1034 CTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTATT 1093
Query 53621 TTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATT-- 53678
|| || | |||||| || | ||| || || |||| ||| | |||||| |||
Sbjct 1094 TTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCATATTTA 1153
Query 53679 -GTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCA 53737
| || | ||| | || || | ||| || || || | |||||||||||| | |||
Sbjct 1154 CGATCAGCAGTTATATACTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCA 1213
Query 53738 T 53738
|
Sbjct 1214 T 1214
>seq11307
Length=4647
Score = 86.0 bits (94), Expect = 7e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 54772 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 54831
|||| ||| || ||||||||||||| || || || || |||||||| |||| || ||
Sbjct 3747 AAATGCTTTCTTAGTTTCTTTGTGTAAGTTGGAAACAGCAATTCTAGCAGCTAAGATAGC 3806
Query 54832 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891
|||||| | ||||| ||| || |||| ||||| |||| || | ||| | |||| |||
Sbjct 3807 ATAATCTGCATGTTTTGTGGTCAAAGTTGCTGCCGTTTCAGCGGCGAGATTATCCAGTTC 3866
Query 54892 TACCGTTGTTACTCC 54906
| || ||||| ||
Sbjct 3867 TTGAGTCGTTACACC 3881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592006924597680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |