Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq229830 113 4e-20
seq80618 105 5e-18
seq160753 96.9 3e-15
>seq229830
Length=7395
Score = 113 bits (124), Expect = 4e-20
Identities = 162/227 (71%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| |||| || ||||| || || || |||||| ||| || || |
Sbjct 6015 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCT 6074
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | ||||| || ||| || ||||||||| | || ||||||
Sbjct 6075 GACACAATTGAAAACGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCTCCAGATCA- 6133
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | || |||||||| || ||||||||||||||| ||| | ||| ||||||
Sbjct 6134 CAACGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACTTTAAGCGACTACAAT 6193
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|| ||||||||||||||||||||| |||| | || | ||||||||
Sbjct 6194 ATCCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGAGGAGG 6240
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|| ||||| || ||| |||| || ||||| || ||||| |||||| || |||||
Sbjct 5556 AATATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCA 5615
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
| || || | | || | || |||||| || || ||||| | ||| |||
Sbjct 5616 TCCGATACTATTGAAAATGTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCAGAC 5675
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| ||| | | ||||| || |||||||||||||||||| ||| || |||||||
Sbjct 5676 CAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATTAC 5735
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|| |||||||| ||||| || |||||| |||| || || | || |||||
Sbjct 5736 AACATTCAAAAAGAATCAACCCTTCACTTGGTATTGCGTCTTCGTGGAGG 5785
>seq80618
Length=357
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
|||||| || ||| |||| || ||||| || || ||||||||| ||| ||||| |
Sbjct 123 AATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTC 182
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
|| || | | || ||||| || || || |||||||| | || ||||||
Sbjct 183 CGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCA 242
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
|||| | | ||||| || || || |||||||||||| || || |||| |||||
Sbjct 243 ACAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCACCTTGTCCGACTACAA 302
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
|| |||||||||||||| |||||| ||||||| ||
Sbjct 303 CATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCG 338
>seq160753
Length=592
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| ||||||| ||||| |||||||| || ||| ||| ||||| |
Sbjct 591 ATGCAGATCTTCGTCAAAACCTTGACTGGCAAAACTATCACCCTTGAAGTTGAACCATCT 532
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | ||||| || || ||||||||||| | || ||||||
Sbjct 531 GACACAATTGAAAACGTCAAGGCTAAGATCCAGGATAAAGAAGGAATCCCTCCAGATCAG 472
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212
||| | | ||||| || |||||||||||||||||| | | | ||| | ||||| |
Sbjct 471 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTAT--CAGATTATA 414
Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGT 25243
| || |||||||| || ||||||||| ||||
Sbjct 413 ACATCCAAAAGGAGTCAACTCTTCACTTGGT 383
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| ||||||| ||||| || ||||| || ||| ||| || || ||
Sbjct 363 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACTATCACCCTTGAAGTTGAGCCATCA 304
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | | ||| || ||| ||||| |||||| | || |||||||
Sbjct 303 GACACCATTGAGAACGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCAGATCAA 244
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | ||||| || || || || ||||||||| || || | ||||| ||
Sbjct 243 CAACGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGCACATTGTCAGATTATAAC 184
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
||||||||||| || || ||||| |||| || ||
Sbjct 183 ATTCAAAAGGAGTCAACCCTTCATTTGGTATTGCG 149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409640073363974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |