Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq80618 102 8e-17 seq229830 96.9 4e-15 >seq80618 Length=357 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || ||||| ||| | || || ||| | | Sbjct 123 AATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTC 182 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | ||| |||||| || || | |||||||| || ||||| | || || Sbjct 183 CGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCA 242 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| || || || |||| || | |||||| | ||||||||| Sbjct 243 ACAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCACCTTGTCCGACTACAA 302 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||| | || || || | |||||||| Sbjct 303 CATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCG 338 >seq229830 Length=7395 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40675 GAAACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTC 40734 ||| |||||| || ||||| || ||||| || || | || || ||||| || ||| | Sbjct 5546 GAATCGCTCC--AATATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTG 5603 Query 40735 GACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGC 40794 || || ||| | |||| | | ||| | || | ||||||| ||||| || || Sbjct 5604 GAGGTTGAACCATCCGATACTATTGAAAATGTTAAAGCTAAAATTCAGGACAAGGAAGGA 5663 Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 |||||| | ||||||||||| | |||| ||| |||||||| |||| || | ||||| Sbjct 5664 ATCCCCCCAGACCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACT 5723 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | | ||| |||||||| || || || | || || || | || ||||| Sbjct 5724 TTGAGCGATTACAACATTCAAAAAGAATCAACCCTTCACTTGGTATTGCG 5773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513731240510160