Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7579 217 1e-51 seq194783 206 2e-48 seq188621 188 5e-43 >seq7579 Length=34747 Score = 217 bits (240), Expect = 1e-51 Identities = 429/627 (68%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 97007 TTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACAT 97066 |||||||||| || ||| || ||||||| ||| | | || ||||| |||||| || Sbjct 14476 TTGGGAAAGGTCTTGGAACTCTTTTAAGCTGTTCTTTCAAAGGATCAACATGATTCTTAT 14417 Query 97067 AAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT---AAATCAGTGACAT 97123 | | |||| || || ||| |||||| ||| |||||| ||| | | || || || Sbjct 14416 AGACATGAGTGTCCCCAAAACTGTGAACAAAGTCTCCA---ACTTTGAGACCACAGAGAT 14360 Query 97124 GGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCA 97183 | || |||||| |||| |||| || || || ||||| || ||||| || || || || | Sbjct 14359 GAGCAATCATATAAGTCAATAAAGCGTAACTTGCAATATTGAAAGG-ACTCCGAGCCCAA 14301 Query 97184 TATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGAC 97243 |||||| || ||||| || | | ||| || | || |||| |||||||| ||| Sbjct 14300 CATCAGCAGACCTTTGGTACATCAAACATGATAACTCATCATCTTGAACATAAAATTGAG 14241 Query 97244 TCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACAC 97302 ||| ||| ||||| || || || ||||||||||||| ||| | |||||||| || Sbjct 14240 -CAAAACAATGACAAGGTGGTAATGCCATTTTTGGAAGATCCACTGGGTTCCAAGCTGAC 14182 Query 97303 ATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGA 97362 || | || ||||| || || || || | | || | | ||| | | || |||||| Sbjct 14181 ATACAGATCCTTCTGTCCGTAGGATTATTCTTGATTCTTTGAATGACATCATTCAATTGA 14122 Query 97363 TCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTC 97422 ||||| |||| ||| | || | | | || ||||||||| |||||||| | | Sbjct 14121 TCAACTCCTTGGTTTGAATAGTCGTCATGACAAGTTTTATATTCTGCCCCAAAATGACGC 14062 Query 97423 CATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTA 97482 |||||||||||||| || || || | || |||||||| |||||| |||||| ||| Sbjct 14061 CATTGGAATCCATAGACTGGCCCCAAATCCCCTTCTTCCCTATCAGTAAAACCACATTTA 14002 Query 97483 TCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGC-TGCAAGCTC 97541 || || | ||| | | ||| ||||||| || | ||| | | || || | Sbjct 14001 TCCAAGAATTCCCTGGTGCTGTTTCCATCCCATATTTTCACGTTTTTTTCTTGTAAAAT- 13943 Query 97542 TTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAA 97601 |||| | ||| ||| |||| ||||| | | |||||| ||||||||||||| || Sbjct 13942 TTTGGCATTAGTTTGACCTTTGATGAACCAAAGAAGTTCTTCTGCAACACCTCTCCAGAA 13883 Query 97602 TACTCTCTTAGTTGTTAAGAGAGGAAA 97628 ||| || || || ||||| | ||||| Sbjct 13882 TACCCTTTTTGTAGTTAATAATGGAAA 13856 >seq194783 Length=813 Score = 206 bits (228), Expect = 2e-48 Identities = 424/628 (68%), Gaps = 2/628 (0%) Strand=Plus/Plus Query 97002 TAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATT 97061 |||| |||||||||| || ||| || || | |||||||| | | | | |||||| Sbjct 70 TAGTTTTGGGAAAGGTCTTGGAACTCTTGTCAACTGCTCTGCCAATGGAATCACGTGATT 129 Query 97062 CACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGAC 97121 | |||| ||||| |||||| | | || | ||| || ||| ||||| | ||| Sbjct 130 CTTGTAAACGTGAGTATCTCCAATGTTATGGACAAAATCACCAACTCTTAAATTACAGAC 189 Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181 ||| || |||||| |||||| | || |||||| ||||| || || || || |||| | Sbjct 190 ATGAGCAATCATATGAGTTAACAAAGCATAGCTGGCAATATTGAATGGAACTCCTAAAGC 249 Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 |||||| | | |||||| || || ||| ||||||| ||||| ||||||||||| Sbjct 250 CATATCTCCAGCTCTTTGGTACAAAGAACAAGAAAGCTCTCCATTTTGAACATAAAACTG 309 Query 97242 ACTCAATAC-ATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCAC 97300 ||| || |||||| || || | ||||||||||||| || | ||||||||| Sbjct 310 -TACAAAACTATGACATGGTGGGAGGGCCATTTTTGGAATGTCCACAGGATTCCAAGCTG 368 Query 97301 ACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATT 97360 ||| | || ||||| || |||| || || | || || | |||| | | || | Sbjct 369 TCATGCAAATCCTTCTGTCATTTGGATTGGTTTTAATTGTGTGGATTACATTGCTCAACT 428 Query 97361 GATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCC 97420 | |||||||||| |||| ||||| || | | | || ||||| || || ||||| | Sbjct 429 GGTCAACGCCTTTTCCAGTATAATCGTCGTGACAAGTTTTGTATTCAGCCCCGAAATGAC 488 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCT 97480 |||||| || ||||| || ||||| | ||||||||||||||| || | |||| | Sbjct 489 GCCATTGAAAGCCATATACTGGTCCCAAGTCTCCTTCTTCTCTGTCTGTAAGACCACATT 548 Query 97481 TATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCT 97540 ||||||| | || | | ||| ||| ||| || | | || ||| Sbjct 549 TATCTAAGAAATCTCTTGTGCAATTGTCATTCCAGATCTTAATGTTCTTGTCTTGAAGTA 608 Query 97541 CTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAA 97600 | || | ||| ||||| | ||||||||||| |||||| || ||| | ||||| | Sbjct 609 CCTTAACATTAGTTTGACCTCTCACAAACCACAACAGTTCTTCAACTACAGCCCTCCAGA 668 Query 97601 ATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 | ||||| || || || || | |||||| Sbjct 669 AGACTCTTTTTGTGGTCAACAAAGGAAA 696 >seq188621 Length=750 Score = 188 bits (208), Expect = 5e-43 Identities = 420/628 (67%), Gaps = 2/628 (0%) Strand=Plus/Minus Query 97002 TAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATT 97061 |||| | |||||||| || ||| || || | |||||||| | | | | |||||| Sbjct 719 TAGTTTAGGGAAAGGTCTTGGAACTCTTGTCAACTGCTCTGCCAATGGAATCACGTGATT 660 Query 97062 CACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGAC 97121 | |||| ||||| |||||| | | || | ||| || ||| ||| | | ||| Sbjct 659 CTTGTAAACGTGAGTATCTCCAATGTTATGGACAAAATCACCAACTCTTAAGTTACAGAC 600 Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181 ||| || |||||| |||||| | | |||||| ||||| || || || || || | || Sbjct 599 ATGAGCAATCATATGAGTTAACAAAACATAGCTGGCAATATTGAATGGAACTCCCAAACC 540 Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 ||||||| | | |||||| || || ||| ||||| | ||||| ||||||||||| Sbjct 539 CATATCACCAGCTCTTTGGTACAAAGAACAAGAAAGTTCTCCATTTTGAACATAAAACTG 480 Query 97242 ACTCAATAC-ATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCAC 97300 ||| || |||||| || || | |||||||| || | || | ||||||||| Sbjct 479 TA-CAAAACTATGACATGGTGGAAGGGCCATTTTAGGGATGTCCACAGGATTCCAAGCTG 421 Query 97301 ACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATT 97360 ||| | || ||||| || |||| || || | || || | |||| || |||| | Sbjct 420 TCATGCAAATCCTTCTGTCATTTGGATTGGTTTTAATTGTGTGGATTACATGGCTTAACT 361 Query 97361 GATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCC 97420 | |||||||||| ||| ||||| | | | | || ||||| || |||||||| | Sbjct 360 GGTCAACGCCTTTGCCAGTATAATCATCATGACAAGTTTTGTATTCAGCCCCAAAATGAC 301 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCT 97480 |||||| || ||||| || ||||| | |||||||||||||||||| | |||| | Sbjct 300 GCCATTGAAAGCCATATACTGGTCCCAAGTCTCCTTCTTCTCTATCTGTAAGACCACATT 241 Query 97481 TATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCT 97540 ||||||| | || | | ||| ||| ||| || | | || ||| Sbjct 240 TATCTAAGAAATCTCTTGTGCAATTATCATTCCAGATCTTAATGTTCTTGTCTTGAAGTA 181 Query 97541 CTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAA 97600 | || | || ||||| | ||||||||||| |||||| || ||| | ||||| | Sbjct 180 CCTTCACATTGGTTTGACCTCTCACAAACCACAACAGTTCTTCAACTACAGCCCTCCAGA 121 Query 97601 ATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 | ||||| ||||| || | | |||||| Sbjct 120 AGACTCTTTTAGTGGTCAGCAAAGGAAA 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345807521386370