Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7579 197 2e-45 seq43178 174 2e-38 seq194783 168 1e-36 seq188621 167 4e-36 seq229830 127 3e-24 seq160753 125 1e-23 >seq7579 Length=34747 Score = 197 bits (218), Expect = 2e-45 Identities = 357/515 (69%), Gaps = 14/515 (3%) Strand=Plus/Minus Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| ||||||||||||||||||||| ||||| |||| ||| || || || || | || Sbjct 14361 ATGAGCAATCATATAAGTCAATAAAGCGTAACTTGCAATATTGAAAGG-ACTCCGAGCCC 14303 Query 205509 CATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAA 205568 | |||||| || ||||| ||||| ||||| | | | || | || ||| ||| Sbjct 14302 AACATCAGCAGACCTTTGGTACATCAAACATGATAACTCATCATCTTGAA---CATAAAA 14246 Query 205569 TTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGC 205628 ||| ||||||||||||||||||||| |||| ||| || ||| | || ||||| || Sbjct 14245 TTGAGCAAAACAATGACAAGGTGGTAATGCCATTTTTGGAAGATCCACTGGGTTCCAAGC 14186 Query 205629 TGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAA 205688 || | || |||| ||| ||||| || ||| | | || | || | || Sbjct 14185 TGACATACAGATCCTTCTGTCCGTAGGATTATTCTTGATTCTTTGAATGACATCATTCAA 14126 Query 205689 TTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAA----TATATTTAGCACCAA 205744 |||||||| |||||| |||| ||| | || ||| ||| |||||| || |||| Sbjct 14125 TTGATCAACTCCTTGGTTTGAATAGTC-GT---CATGACAAGTTTTATATTCTGCCCCAA 14070 Query 205745 AATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAAC 205804 ||||||||||||| || ||||| ||||| || ||||| ||||||| |||||| |||||| Sbjct 14069 AATGACGCCATTGGAATCCATAGACTGGCCCCAAATCCCCTTCTTCCCTATCAGTAAAAC 14010 Query 205805 CACGtttttttatatattttaatgat-ccattttcatcccaaatatggattcctttattt 205863 ||| ||| | | | | || || | | ||| ||||||| || | | ||| | | Sbjct 14009 CACATTTATCCA-AGAATTCCCTGGTGCTGTTTCCATCCCATATTTTCACGTTTTTTTCT 13951 Query 205864 tttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCT 205923 | || ||| || | ||||||| || || ||||| | | |||||| ||| ||| Sbjct 13950 TGTAAAATTTTGGCATTAGTTTGACCTTTGATGAACCAAAGAAGTTCTTCTGCAACACCT 13891 Query 205924 CTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 ||||| || | |||||| || ||||||||||| Sbjct 13890 CTCCAGAATACCCTTTTTGTAGTTAATAATGGAAA 13856 >seq43178 Length=4857 Score = 174 bits (192), Expect = 2e-38 Identities = 316/460 (69%), Gaps = 12/460 (3%) Strand=Plus/Plus Query 202934 AATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAA 202993 || ||||||||||| || |||||||| | || || || |||||||||||||| || Sbjct 3 AAAGCTTCTTCTGGAGAAGAAGTCCATTCAAGAATCTTCTTTGCCCAATACATTCTCAAG 62 Query 202994 TATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCA 203053 | |||||||||||||| | |||||| ||| |||| | || ||||| |||| ||| Sbjct 63 AAACCATGCATTTTACCCTCATTAATCAATTGAATTTGAGCTGAGTTCCACAAATCATCA 122 Query 203054 TGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTA 203113 | |||| || | ||| | || | |||| | | | |||| | || || | Sbjct 123 TAAGTTTTAGCTTCTTCCAATTCTGTCTTAGTATACAAAGGACTTCTTTTGTCCTTACGA 182 Query 203114 TGTTCATTTAGTGTTTTTATTGCCCAATTATT--AGCACCATTTATATTATCGTAATTTT 203171 || | | | |||||| ||||||| | | ||| | | | |||||||| |||| Sbjct 183 TGATTGTCCAAGGTTTTTCGAGCCCAATCACTCAAGCCCGA--AAGTTTATCGTAGTTTT 240 Query 203172 CATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAA 203231 ||||||| ||||||| |||||| |||||| | |||| |||||||||||||||||| Sbjct 241 CATTATAGAAACAAAAGTTATCAGCAAGTTCTCTTCGAACAATAGCTTCTTCACAAAATG 300 Query 203232 CTTCTACCGATTT----AGGATATAATTTTTTATATTTGTTAATTTCTAATATTATTCTT 203287 |||| || | ||| | || || ||| || |||| | | || | |||| Sbjct 301 CTTCAACAGCTTTTGAGTGCTTAGAA----GCATACTTCTTAACGTGAAGTACTGCTCTT 356 Query 203288 TGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTT 203347 ||| |||| ||| |||||||| | ||| ||||| | || | ||||| ||||| Sbjct 357 TGACAGGAAAGTTGTCCAAAATGAAACCAAGGTGAAAGGTTGGAGACTGCATCTACATTT 416 Query 203348 GGATCATTTCtttttttAGCATAATCTTTTAATCTATTTT 203387 |||||||||||||| | ||| ||| |||||| | ||||| Sbjct 417 GGATCATTTCTTTTATCGGCAAAATATTTTAACCGATTTT 456 >seq194783 Length=813 Score = 168 bits (186), Expect = 1e-36 Identities = 373/557 (67%), Gaps = 7/557 (1%) Strand=Plus/Plus Query 205408 CCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTC 205467 ||||| ||||| | ||| ||| | |||||||| | ||| |||||||||| ||| Sbjct 149 CCAATGTTATGGACAAAATCACCAACTCTTAAATTACAGACATGAGCAATCATATGAGTT 208 Query 205468 AATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGA 205527 || ||| ||| || |||| ||| ||||| || |||||| ||||||| | | |||||| Sbjct 209 AACAAAGCATAGCTGGCAATATTGAATGGAACTCCTAAAGCCATATCTCCAGCTCTTTGG 268 Query 205528 TACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAA 205587 |||| ||| | ||| | | ||| | || ||| ||| |||||||||| |||||| Sbjct 269 TACAAAGAACAAGAAAGCTCTCCATTTTGAA---CATAAAACTGTACAAAACTATGACAT 325 Query 205588 GGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTA 205647 ||||| | |||| ||| || || | ||||||||| ||||| | || |||| Sbjct 326 GGTGGGAGGGCCATTTTTGGAATGTCCACAGGATTCCAAGCTGTCATGCAAATCCTTCTG 385 Query 205648 GATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTT 205707 | || || |||| ||| | | || | || | || || |||| |||| Sbjct 386 TCATTTGGATTGGTTTTAATTGTGTGGATTACATTGCTCAACTGGTCAACGCCTTTTCCA 445 Query 205708 GTATAAT--TTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCAT 205765 ||||||| | || | | | | |||| ||| || ||||||||||||||||| |||| Sbjct 446 GTATAATCGTCGTGACAAGTTT--TGTATTCAGCCCCGAAATGACGCCATTGAAAGCCAT 503 Query 205766 AAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatatttta 205825 | ||||| || || || ||||||| ||| || ||| ||||| ||| | || | | | Sbjct 504 ATACTGGTCCCAAGTCTCCTTCTTCTCTGTCTGTAAGACCACATTTATCTAAGAAATCTC 563 Query 205826 atgatccattttcatcccaaatatggattcctttattttttaGAATATTTGTATTAGTTG 205885 || | ||| |||| ||| || | || || | || || | || ||||||| Sbjct 564 TTGTGCAATTGTCATTCCAGATCTTAATGTTCTTGTCTTGAAGTACCTTAACATTAGTTT 623 Query 205886 ATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTG 205945 || | |||||| || | ||||||||| | | ||||| || | | |||||| | Sbjct 624 GACCTCTCACAAACCACAACAGTTCTTCAACTACAGCCCTCCAGAAGACTCTTTTTGTGG 683 Query 205946 TAAATAATGGAAATGAA 205962 | || || ||||||||| Sbjct 684 TCAACAAAGGAAATGAA 700 >seq188621 Length=750 Score = 167 bits (184), Expect = 4e-36 Identities = 374/559 (67%), Gaps = 11/559 (2%) Strand=Plus/Minus Query 205408 CCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTC 205467 ||||| ||||| | ||| ||| | |||| ||| | ||| |||||||||| ||| Sbjct 640 CCAATGTTATGGACAAAATCACCAACTCTTAAGTTACAGACATGAGCAATCATATGAGTT 581 Query 205468 AATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGA 205527 || ||| ||| || |||| ||| ||||| || || |||||||||||| | | |||||| Sbjct 580 AACAAAACATAGCTGGCAATATTGAATGGAACTCCCAAACCCATATCACCAGCTCTTTGG 521 Query 205528 TACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAA 205587 |||| ||| | ||| | | ||| | | |||| ||| |||||||||| |||||| Sbjct 520 TACAAAGAACAAGAAAGTTCTCCATTTTGA---ACATAAAACTGTACAAAACTATGACAT 464 Query 205588 GGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTA 205647 ||||| | |||| || | || | ||||||||| ||||| | || |||| Sbjct 463 GGTGGAAGGGCCATTTTAGGGATGTCCACAGGATTCCAAGCTGTCATGCAAATCCTTCTG 404 Query 205648 GATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTT 205707 | || || |||| ||| | | || | ||| |||| || |||| |||| Sbjct 403 TCATTTGGATTGGTTTTAATTGTGTGGATTACATGGCTTAACTGGTCAACGCCTTTGCCA 344 Query 205708 GTATAATTTGTATCCATATCAA----TATATTTAGCACCAAAATGACGCCATTGAAAACC 205763 ||||||| || ||| ||| | |||| ||| |||||||||||||||||||| || Sbjct 343 GTATAAT---CAT-CATGACAAGTTTTGTATTCAGCCCCAAAATGACGCCATTGAAAGCC 288 Query 205764 ATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattt 205823 ||| ||||| || || || ||||||| |||||| ||| ||||| ||| | || | | Sbjct 287 ATATACTGGTCCCAAGTCTCCTTCTTCTCTATCTGTAAGACCACATTTATCTAAGAAATC 228 Query 205824 taatgatccattttcatcccaaatatggattcctttattttttaGAATATTTGTATTAGT 205883 | || | ||| |||| ||| || | || || | || || | || ||| || Sbjct 227 TCTTGTGCAATTATCATTCCAGATCTTAATGTTCTTGTCTTGAAGTACCTTCACATTGGT 168 Query 205884 TGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGT 205943 | || | |||||| || | ||||||||| | | ||||| || | | ||| || Sbjct 167 TTGACCTCTCACAAACCACAACAGTTCTTCAACTACAGCCCTCCAGAAGACTCTTTTAGT 108 Query 205944 TGTAAATAATGGAAATGAA 205962 || | || ||||||||| Sbjct 107 GGTCAGCAAAGGAAATGAA 89 >seq229830 Length=7395 Score = 127 bits (140), Expect = 3e-24 Identities = 167/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || || ||||| || |||| |||| || | Sbjct 6015 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCT 6074 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || || |||||||| ||||||||||| || || |||| | Sbjct 6075 GACACAATTGAAAACGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCTCCAGATC-A 6133 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| || |||||||| || ||| |||| || ||| || || ||| Sbjct 6134 CAACGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACTTTAAGCGACTACAAT 6193 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| | || |||||| | ||| | ||||| ||||| Sbjct 6194 ATCCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGAGGAGGTAT 6243 Score = 113 bits (124), Expect = 7e-20 Identities = 189/270 (70%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || ||||| || || | ||| ||||| || Sbjct 5559 ATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCATCC 5618 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||| || || ||||| || || || || || Sbjct 5619 GATACTATTGAAAATGTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAG 5678 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || |||||||| || ||| | || || || ||||| || Sbjct 5679 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATTACAAC 5738 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 ||||||||||||||||| | || ||||| || ||| | || || ||||| ||| ||| Sbjct 5739 ATTCAAAAAGAATCAACCCTTCACTTGGTATTGCGTCTTCGTGGAGGTATGCAAATTTTC 5798 Query 124778 ATAAAAA--TTGATTGTAAATAAATATCAC 124805 | |||| |||| || ||| || ||||| Sbjct 5799 GTCAAAACCTTGACTGGAAA-AACCATCAC 5827 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || ||||| || || | || |||| | | Sbjct 5787 ATGCAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCT 5846 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || || || ||||| ||||||||||| || || |||||| Sbjct 5847 GACACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 5906 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || |||||||| || || | || ||||| ||| ||||| Sbjct 5907 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACATTGTCAGACTATAAC 5966 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | ||||| || |||||| | |||| ||||| Sbjct 5967 ATTCAAAAAGAATCTACACTCCATTTAGTATTACGTCTCAGAGGAGGTAT 6016 >seq160753 Length=592 Score = 125 bits (138), Expect = 1e-23 Identities = 192/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || ||||||||||| || | || ||||| || | Sbjct 591 ATGCAGATCTTCGTCAAAACCTTGACTGGCAAAACTATCACCCTTGAAGTTGAACCATCT 532 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || || || || ||||||||||| || || || ||||| Sbjct 531 GACACAATTGAAAACGTCAAGGCTAAGATCCAGGATAAAGAAGGAATCCCTCCAGATCAG 472 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || |||||||| || ||| | || |||||| ||||||||| Sbjct 471 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTATCAGATTATAAC 412 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || ||||| || |||||| | || |||||| | ||| | || |||||||| | | ||| Sbjct 411 ATCCAAAAGGAGTCAACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGTATGCAGATTTTC 352 Query 124778 ATAAAAA--TTGATTGTAAATAAATATCAC 124805 | |||| |||| || ||| || |||||| Sbjct 351 GTCAAAACTTTGACTGGAAA-AACTATCAC 323 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| |||||||| || || ||||||||| | | || || || ||||| Sbjct 279 AAGATTCAAGATAAGGAAGGTATCCCTCCAGATCAACAACGTTTGATCTTCGCCGGAAAG 220 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || || ||| | || ||||| ||||||||| |||||||| || ||||| | ||| Sbjct 219 CAGTTGGAAGATGGACGCACATTGTCAGATTATAACATTCAAAAGGAGTCAACCCTTCAT 160 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||| | || |||||||| Sbjct 159 TTGGTATTGCGTCTCCGTGGTGGTAT 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753274233628800