Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq43178 111 3e-19 >seq43178 Length=4857 Score = 111 bits (122), Expect = 3e-19 Identities = 211/307 (69%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 189257 GTTGAAACGTTTATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTAC 189316 |||||| | ||| || ||| ||||| |||||||||| | ||||| ||||||| | Sbjct 307 GTTGAAGCATTTTGTGAAGAAGCTATTGTTCGAAGAGAACTTGCTGATAACTTTTGTTTC 248 Query 189317 TATAACAAACATTATGATAGTATC-CAGTCTACTCATTCAT-GGGCCAGAAAAACATTAG 189374 ||||| || | || |||| | | | || | | | || |||| ||||||| || | Sbjct 247 TATAATGAAAACTACGATAAACTTTCGGGCT--TGAGTGATTGGGCTCGAAAAACCTTGG 190 Query 189375 AAGATCACATTAATGATCCTAGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGG 189434 | |||| ||| || |||| | | ||| | | | | || | ||| |||| Sbjct 189 ACAATCATCGTAAGGACAAAAGAAGTCCTTTGTATACTAAGACAGAATTGGAAGAAGCTA 130 Query 189435 AAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGC 189494 ||||| ||||| | | |||||| | | ||||| || || | | || || ||||||| Sbjct 129 AAACTTATGATGATTTGTGGAACTCAGCTCAAATTCAATTGATTAATGAGGGTAAAATGC 70 Query 189495 ATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAG 189554 || |||| || ||||||||||||| |||||||| |||||||||||| | || |||| Sbjct 69 ATGGTTTCTTGAGAATGTATTGGGCAAAGAAGATTCTTGAATGGACTTCTTCTCCAGAAG 10 Query 189555 ACGCTTT 189561 | ||||| Sbjct 9 AAGCTTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920530596101640