Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7579 210 2e-49 seq188621 143 2e-29 seq194783 134 1e-26 >seq7579 Length=34747 Score = 210 bits (232), Expect = 2e-49 Identities = 540/813 (66%), Gaps = 21/813 (3%) Strand=Plus/Plus Query 19976 CAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGA 20035 ||||||| |||||| ||| || || ||| | ||||| ||| | | ||| | | Sbjct 13788 CAGATCGTACCGGAGTTGGCACTTTGTCTATCTTTGGTTGTCAAATGAGGTTTAATCTCA 13847 Query 20036 GAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGT 20095 || || | ||||| ||||||||||| ||| ||||||| |||| ||| |||| ||||| Sbjct 13848 GAGATCAGTTTCCATTATTAACTACAAAAAGGGTATTCTGGAGAGGTGTTGCAGAAGAAC 13907 Query 20096 TATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTA---GAAAAAGGAGTTA 20152 | | ||||| || ||||| ||| ||| | | | || || |||||| || | Sbjct 13908 TTCTTTGGTTCATCAAAGGTCAAACTAATGCCA---AAATTTTACAAGAAAAAAACGTGA 13964 Query 20153 AGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATG-GATTTGACA-ACCG 20210 | || ||| | | | | | | | |||| || | | |||| | ||| || | | Sbjct 13965 AAATATGGGATGGAAACAGCACCAGGGAATTCTTGGATA--AATGTGGTTTTACTGATAG 14022 Query 20211 TCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATA 20270 |||| ||||||||||| || || |||||||| |||||| | |||||||| || ||||| Sbjct 14023 GGAAGAAGGGGATTTGGGGCCAGTCTATGGATTCCAATGGCGTCATTTTGGGGCAGAATA 14082 Query 20271 TG----TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTA 20326 | ||| ||||| || |||| |||||||| |||||||| | |||| | Sbjct 14083 TAAAACTTGTCATGACGAC----TATTCAAACCAAGGAGTTGATCAATTGAATGATGTCA 14138 Query 20327 TTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTA 20386 || | ||| || | || || | |||||||| || | | | || |||||| | Sbjct 14139 TTCAAAGAATCAAGAATAATCCTACGGACAGAAGGATCTGTATGTCAGCTTGGAACCCAG 14198 Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCT 20445 ||| | || |||||| || || || |||||| || | ||| |||||||| ||| Sbjct 14199 TGGATCTTCCAAAAATGGCATTACCACCTTGTCAT-TGTTTTGCTCAATTTTATGTTCAA 14257 Query 20446 AATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCT 20505 || |||| || || ||| ||||| ||| | || |||||| | || || || || ||| Sbjct 14258 GATGATGAGTTATCATGTTTGATGTACCAAAGGTCTGCTGATGTTGGGCTCGGAGT-CCT 14316 Query 20506 TTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAA 20565 ||||||||||||||||| || | | || ||||||||||| ||| | | | | ||| Sbjct 14317 TTCAATATTGCAAGTTACGCTTTATTGACTTATATGATTGCTCATCTCTGTGGTCTCAAA 14376 Query 20566 ACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCT 20625 || ||||| || |||| | || ||| | ||| | || |||||| | || ||| Sbjct 14377 GTTGGAGACTTTGTTCACAGTTTTGGGGACACTCATGTCTATAAGAATCATGTTGATCCT 14436 Query 20626 TTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACT 20685 || ||| |||| | | | || |||| || ||||||| || ||||| || | Sbjct 14437 TTGAAAGAACAGCTTAAAAGAGTTCCAAGACCTTTCCCAAAGCTGATCATTAACCGTAAA 14496 Query 20686 GTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCAT 20745 || | | || | || || ||| ||| ||||| | |||||||| |||| || Sbjct 14497 GTCGAGAAAATCGAGGACTTCAAATTTGAAGATTTCACTATTGAAGGTTACGATCCATAT 14556 Query 20746 AATTCAATTCCAATGGAAATGTCTGTTTAATAT 20778 | ||| |||||||||| | ||||||||| Sbjct 14557 CCAACTATTAAAATGGAAATGGCCGTTTAATAT 14589 >seq188621 Length=750 Score = 143 bits (158), Expect = 2e-29 Identities = 281/410 (69%), Gaps = 14/410 (3%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || || ||||| || || ||||| ||||||||| | |||||||| |||||||| Sbjct 262 AAGAAGGAGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTTGGGGCTGAATACA 321 Query 20273 ----TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT 20328 ||| ||||| | |||| ||| |||| || || || ||| |||| || Sbjct 322 AAACTTGTCATGATGA----TTATACTGGCAAAGGCGTTGACCAGTTAAGCCATGTAATC 377 Query 20329 AATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGC--GCCTGGAACGCTA 20386 | ||||||||| || ||||| |||||||| ||| | ||| || ||||| || Sbjct 378 CACACAATTAAAACCAATCCAAATGACAGAAGGATT--TGCATGACAGCTTGGAATCCTG 435 Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCT 20445 || | ||| |||||| | || |||||||||| | | || || ||||| ||| Sbjct 436 TGGACATCCCTAAAATGGCCCTTCCACCATGTCATA-GTTTTGTACAGTTTTATGTTCAA 494 Query 20446 AATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCT 20505 ||| ||| | || ||| |||| ||| || | | ||||||||| |||| ||||| Sbjct 495 AATGGAGAACTTTCTTGTTCTTTGTACCAAAGAGCTGGTGATATGGGTTTGGGAGTTCCA 554 Query 20506 TTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAA 20565 ||||||||||| || |||| || | || |||||||||| ||||| | |||| | Sbjct 555 TTCAATATTGCCAGCTATGTTTTGTTAACTCATATGATTGCTCATGTCTGTAACTTAAGA 614 Query 20566 ACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCA 20615 ||||| || ||||| | ||| ||||| | || ||||| ||||| Sbjct 615 GTTGGTGATTTTGTCCATAACATTGGAGATACTCACGTTTACAAGAATCA 664 >seq194783 Length=813 Score = 134 bits (148), Expect = 1e-26 Identities = 387/581 (67%), Gaps = 16/581 (3%) Strand=Plus/Minus Query 20043 ATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATG 20102 |||||| || || || || ||| | || || |||| | || |||||||| | || || Sbjct 697 ATTTCCTTTGTTGACCACAAAAAGAGTCTTCTGGAGGGCTGTAGTTGAAGAACTGTTGTG 638 Query 20103 GTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAG 20162 |||| | | ||| ||| ||| || | ||| ||| || ||||||| |||| Sbjct 637 GTTTGTGAGAGGTCAAACTAATGTTAAGGTACTTCAAGACAAGAACATTAAGATCTGGAA 578 Query 20163 CGCACATGGATCTAAGCAATTT-TTACACAGCAATG-GATTTGACA-ACCGTCAAGAGGG 20219 | || | | ||| |||| ||| | | |||| | | | ||| || | |||| || Sbjct 577 TGACAATTGCAC-AAGAGATTTCTTAGATA--AATGTGGTCTTACAGACAGAGAAGAAGG 521 Query 20220 GGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACAT 20279 || ||||| || || ||||| ||||||||| | ||||| || |||||||| || | Sbjct 520 AGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTCGGGGCTGAATACAAA-ACTT 462 Query 20280 GAACACAA--ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 | ||| | ||||| |||| |||| || || || || ||||| || | |||| Sbjct 461 GT-CACGACGATTATACTGGAAAAGGCGTTGACCAGTTGAGCAATGTAATCCACACAATT 403 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGC--GCCTGGAACGCTAAAGATGTGC 20395 ||||| || ||||| |||||||| ||| | ||| || ||||| || || | | Sbjct 402 AAAACCAATCCAAATGACAGAAGGATT--TGCATGACAGCTTGGAATCCTGTGGACATTC 345 Query 20396 CTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAA 20454 | |||||| | || |||||||||| | | || || ||||| ||| ||| || Sbjct 344 CAAAAATGGCCCTCCCACCATGTCATA-GTTTTGTACAGTTTTATGTTCAAAATGGAGAG 286 Query 20455 TTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATT 20514 | || ||| |||| ||| || | | ||||||| | || ||||| ||||||||| Sbjct 285 CTTTCTTGTTCTTTGTACCAAAGAGCTGGAGATATGGCTTTAGGAGTTCCATTCAATATT 226 Query 20515 GCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGAC 20574 || || ||||| || | || |||||||||| ||||| |||||| | ||||| Sbjct 225 GCCAGCTATGCTTTGTTAACTCATATGATTGCTCATGTCTGTAATTTAAGAGTTGGTGAT 166 Query 20575 TTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCA 20615 || ||||| | ||| ||||| | || ||||| ||||| Sbjct 165 TTTGTCCATAACATTGGAGATACTCACGTTTACAAGAATCA 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398059972827745