Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq229830 109 4e-19 seq160753 104 2e-17 seq80618 86.0 5e-12 >seq229830 Length=7395 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || ||||| ||||||||||||||||| ||||| | || ||| | |||||||||||| Sbjct 5989 TGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGTCCGTCTTCCAATTGT 5930 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| | | ||||||||| || | ||||| || || || | Sbjct 5929 TTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTG 5870 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| |||||| ||||| ||| | |||||| |||| || ||| Sbjct 5869 GCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATGGTTTTTCCAGTC 5810 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || ||||| || ||||||||||| Sbjct 5809 AAGGTTTTGACGAAAATTTGCAT 5787 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | | ||||| |||||| ||||||||||||||||||||||| ||| | Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||||||||| || |||| | | ||| || || ||| Sbjct 5725 AAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 5666 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| | || || || | | ||| ||| || || || Sbjct 5665 ATTCCTTCCTTGTCCTGAATTT-TAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 5607 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||| || |||| || ||||| || || || ||||| ||||| || Sbjct 5606 CTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| |||||| || ||||| ||||| || ||||||||| Sbjct 6240 CCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 6181 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| |||| || | ||| ||||| || Sbjct 6180 AAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGA 6122 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||| | |||||| | | ||| |||||| ||||| | Sbjct 6121 ATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACT 6062 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| || | || || ||||| || || || || |||||||| Sbjct 6061 TCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015 >seq160753 Length=592 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| ||||| || ||||| ||||| || || | Sbjct 365 CCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGAT 424 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||||||||||||| || |||| | | ||| ||||| || Sbjct 425 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGG 484 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| || | |||||| | | ||| |||||| || || | Sbjct 485 ATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACT 544 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| ||||||| ||||| ||||| || || || ||||| Sbjct 545 TCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||||| ||||| || ||||||||||| || || | || ||| | |||||| Sbjct 154 TACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCATCTTC 213 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||| || || || || |||| | | ||||||||| || | ||||||||||| Sbjct 214 CAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCTTG 273 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 ||| | ||| || | ||| ||||| ||||| ||||| |||||| |||| Sbjct 274 AATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATAGTTTT 333 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| ||||| || ||||| ||||| Sbjct 334 TCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 >seq80618 Length=357 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||||||||||| || || | ||||||| Sbjct 332 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCC 273 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || || |||| | | ||||||||| || | ||||| || || Sbjct 272 AATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGG 213 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | | ||| ||||| || || ||| | ||| ||| | || Sbjct 212 ATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTCTTA 153 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||| || || || ||||| |||||| Sbjct 152 CCAGTCAAAGTCTTGACGAAAATCTGCATT 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378275838541545