Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq54449 273 2e-68 seq229830 168 6e-37 seq160753 120 3e-22 >seq54449 Length=2482 Score = 273 bits (302), Expect = 2e-68 Identities = 591/871 (68%), Gaps = 31/871 (4%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| || || || ||||| || || || || ||||| || || | ||| ||||| || Sbjct 269 TTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTACATTCCT 328 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224 || |||||||||| ||||| ||||| ||||| || || || ||||||||||| | || Sbjct 329 GTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAGTTTGGT 388 Query 22225 -CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | | |||| | | ||||| |||||||| ||||| ||||| || |||| ||| || | Sbjct 389 TCTGCTACATGAATA--TTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCAGCAG 446 Query 22284 CCATAT---TTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 |||| | || | || || || || |||||||| || || || || |||| |||| Sbjct 447 CCATTTGAATTGTAGATTTA---ATGGATATTTCCCAAACAGTTTTATAAAGTTCTCTGA 503 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCC--GTTATTGTGTATGATCAAATT 22398 | | | || || |||||| || | || || ||| ||| || || || Sbjct 504 TATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTT-TTGAA-ATAATTTCGTT 561 Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 ||| || ||||| ||| ||| | | | || || || |||| || ||| |||| || Sbjct 562 TTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTAC 621 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 ||||| ||||| || || || || || || | ||||| || || || | |||||||| Sbjct 622 AACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAA 681 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 |||||||||||||||| || ||||| || ||||| || ||||| || || | || || Sbjct 682 TGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAA 741 Query 22579 CGAGTTTCTCAAGCCGTG---CTTTGAAATTTTA--CTCTTGAGCATCGACCAGTCCCAC 22633 || ||||| | || || |||| |||||| || | |||| | ||| |||||| Sbjct 742 TGAATTTCTTACTCCATGAACCTTT---ATTTTATCCTTTAGAGCTT--GCCAATCCCAC 796 Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGG 22693 | ||| | || || |||||||||||||| ||||| || | || || | ||| Sbjct 797 AAATCAGTTGGGGT---TTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGG 853 Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAAC 22753 || || || || ||||| || | ||| | | | | |||||||| || || || || | Sbjct 854 CTTCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGA 913 Query 22754 GCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGC--GACGCTTT 22811 || || ||||| || ||||| || |||| || || | | | | | | | |||| Sbjct 914 GCTCCATAATAAATTGTCTCAAATATTTGCTGATT--AAGCAACTGAGCCTTTTCACTTT 971 Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 |||| || |||||| | | || || || | | ||| || || || || ||||| | Sbjct 972 CGTAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAG 1031 Query 22872 GTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 | | || | ||| ||| | | || || ||||| ||||| |||| ||| ||| Sbjct 1032 GCCTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTA 1091 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGT 22962 || |||| || |||||||| | |||||| || Sbjct 1092 TTTTGTTTAAATTTCTGGTTATAATTTTTGT 1122 Score = 219 bits (242), Expect = 4e-52 Identities = 639/973 (66%), Gaps = 17/973 (2%) Strand=Plus/Plus Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 |||||||| ||||| || || ||||| |||||||| || || || | ||| || || Sbjct 1330 TACTCTACGATTTCAGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTA 1389 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || |||| ||||| | ||| ||||| | ||| || || || || || || || || ||| Sbjct 1390 CTCTTTCTGTTGCAAGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGAC 1449 Query 23186 TCGATGATCGCTCGCCACA-TAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTT 23243 || || || || ||| | | || ||||| | | || | | | ||||| | Sbjct 1450 TCAATAATTGCATACCAGAGTTGT-TGAGCTTTTATTT-TCCTGTTTGCTTTTCCTTCAT 1507 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303 || ||||| || | |||||||| |||| || ||| || ||||| Sbjct 1508 TTTCATACTTAATATAGAGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGAC 1567 Query 23304 ATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGAT 23363 ||| |||||||| ||| ||| | |||| ||||| ||| ||||||| | || Sbjct 1568 ATTTGTGAGGACACATAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAAT 1627 Query 23364 CCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCT 23423 | || ||||||| ||||||||| || || | || || ||| ||||| || ||||| | Sbjct 1628 CTGGAATCCATAAAGCGTAGAAAAGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTT 1687 Query 23424 TTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACG 23483 | |||||||||||||| || || | || | |||||| || || | |||| || || | Sbjct 1688 TCTTCAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATG 1747 Query 23484 CGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543 | || || ||||| ||||| || ||||| || || ||||| || ||| | ||||||| Sbjct 1748 CTCCAGGCCTCTTGTTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTA 1807 Query 23544 GCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTC 23603 ||| || || | ||| || || | || || || | | | ||||| || | Sbjct 1808 ACATGGGAACTAAACCATTTGAAGTTCCATTAGTTCCAGCAATAGCTGTCCCTTTAGCCC 1867 Query 23604 GAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTT 23663 ||| ||| || | || || || || || | || || || ||||| || ||||||| Sbjct 1868 GAATACAGTGTACATTTAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTGTT 1927 Query 23664 TCAGAGTGTCGTAGATGCCCTCGATG----CTGTCCTCTTTGGTCGCGACCAAG-AAACA 23718 | | | | |||| || || ||| ||| | | ||| | | ||| ||||| Sbjct 1928 CAACGGACTTGAAGATCCCTTCTATGGAATCTGAGCACATTGTTAG-----AAGAAAACA 1982 Query 23719 CGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAA 23778 ||||||| ||| | | || || || || | || | || || |||||| |||| Sbjct 1983 TGAAGACAATTGAGGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAA 2042 Query 23779 GTATCCATTC-GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTA 23837 || || ||| || | ||||| || || || || || ||||| ||||| | ||| || | Sbjct 2043 ATA-CCTTTCAGATAAAAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAA 2101 Query 23838 TACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTT 23897 | || | ||||| | ||| | ||||| ||||||||| || | | || || || | Sbjct 2102 TTCCTACAGCGACTCTCATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCT 2161 Query 23898 TGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGAT 23957 | || |||||||| || | || |||||||||||||| || | || | || | | || Sbjct 2162 TCAAAAGATATGAGCGCTCCAATGTTTTAAATCCAAAGTAATTGTA-TCCAAAACTCTAT 2220 Query 23958 CGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGAAAAT 24017 | | | || | ||||||||||| | || || | || | | |||||| |||| Sbjct 2221 CATAAATGATAGATGAATTCAAACGCTCAGCGTTTTTAATGACCACATCGTAATGGAAAT 2280 Query 24018 TCGATATCATCGG 24030 |||||||| || Sbjct 2281 CTGATATCATTGG 2293 >seq229830 Length=7395 Score = 168 bits (186), Expect = 6e-37 Identities = 169/217 (78%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 || || ||||| |||||||| |||||| |||| || ||||| || ||| | || |||||| Sbjct 5553 TCCAATATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAA 5612 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || ||||| | | | |||| || ||| | ||| |||||||||||| | || || Sbjct 5613 CCATCCGATACTATTGAAAATGTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCA 5672 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGA 31365 |||||||| ||| | || |||||||||||||| |||||||| | | | ||| ||||||| Sbjct 5673 GACCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGA-TGGACGCACTTTGAGCGA 5731 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||| ||||||||||||||||| || ||||| ||||| Sbjct 5732 TTACAACATTCAAAAAGAATCAACCCTTCACTTGGTA 5768 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || |||| || ||||| ||||| | || ||||| || || Sbjct 5787 ATGCAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCT 5846 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | || ||||| ||||| | || || || || Sbjct 5847 GACACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 5906 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||||||||| ||||||||| || || || |||||| Sbjct 5907 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACATTGTCAGACTATAAC 5966 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || || ||| | ||| | | || || || |||| Sbjct 5967 ATTCAAAAAGAATCTACACTCCATTTAGTATTACGTCTCAGAGGAGGTA 6015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || || || |||||||| || || || || || ||| | || Sbjct 31 GGACAAGGAAGGCATTCCTCCAGATCAACAGCGTCTCATTTTTGCCGGAAAGCAGCTCGA 90 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| ||| | ||||| |||||||||||||||||||| ||||| || |||| Sbjct 91 AGATGGCCGCACTCTTAGCGACTATAACATTCAAAAAGAATCTACTCTCCACTTGGT 147 >seq160753 Length=592 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || |||| |||||||| |||||| | || |||||||| || Sbjct 591 ATGCAGATCTTCGTCAAAACCTTGACTGGCAAAACTATCACCCTTGAAGTTGAACCATCT 532 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | || ||| || ||||| | || || || ||| Sbjct 531 GACACAATTGAAAACGTCAAGGCTAAGATCCAGGATAAAGAAGGAATCCCTCCAGATCAG 472 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || ||| | || |||||||||||||| |||||||| | | | || | | |||||||| Sbjct 471 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGA-TGGACGCACATTATCAGATTATAA 413 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| || || |||||||| |||| ||| | || | || |||| Sbjct 412 CATCCAAAAGGAGTCAACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGTA 363 Score = 102 bits (112), Expect = 7e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || ||| |||| || ||||| |||||| | || ||||| || || Sbjct 363 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACTATCACCCTTGAAGTTGAGCCATCA 304 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | ||| | | | |||||||| | || || || || Sbjct 303 GACACCATTGAGAACGTTAAGGCTAAGATTCAAG-ATAAGGAAGGTATCCCTCCAGATCA 245 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||| | || ||||| || || ||||||||||| | | | || || ||||||| Sbjct 244 ACAACGTTTGATCTTCGCCGGAAAGCAGTTGGAAGA-TGGACGCACATTGTCAGATTATA 186 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 |||||||||| || || || |||||| ||||| Sbjct 185 ACATTCAAAAGGAGTCAACCCTTCATTTGGTA 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444479021064720