Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq54449 416 4e-111 seq55846 82.4 1e-10 >seq54449 Length=2482 Score = 416 bits (460), Expect = 4e-111 Identities = 677/960 (71%), Gaps = 21/960 (2%) Strand=Plus/Plus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || || | |||||| ||||| | |||| | | | | ||| | || || |||||||| Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 |||||||||||||| || || || | ||||||||||||||||||| |||| || ||||| Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || | || ||||||| |||||||| | || || || ||||| || | ||||| Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGT 1470 Query 63129 ACTCGAGCCTTTATTATAGA-TTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCG 63187 | |||| |||||| | |||| | ||||| | |||| || | |||| | | Sbjct 1471 TGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCAT-TTTCATACTTAATATAGAGTTT 1529 Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 || || || || |||||||||| || ||||| ||||||| | |||||||| | || Sbjct 1530 CTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGAGA 1589 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306 ||| ||| ||||| ||| || ||||||||||| | ||| |||||||| | ||| || || Sbjct 1590 CCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAGAA 1649 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 | |||||||| | || | || || |||||||| || || || | ||| | || | | Sbjct 1650 A-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAATTCAA 1708 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 |||||| |||||||| |||||||| || || || | ||||||||| ||||| |||| Sbjct 1709 AAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCCTC 1768 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 | ||||||| |||| || ||||| | ||||| ||||| |||| | ||| |||| Sbjct 1769 CTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATTTG 1828 Query 63487 ATATACCATTGGTACCGGAGATATAGC--CTCCACTGGCACGAATA----TTACTAATTG 63540 | | ||||| || || || ||||| || | || |||||| ||| ||| Sbjct 1829 AAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTAC--ATT- 1883 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT--A 63598 || || ||||| ||||| || || || | || ||| | || |||| | | | | Sbjct 1884 -TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACG-GACTTGAA 1940 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 ||| ||||||||| ||| | ||| | || |||||||| ||||| ||| | | Sbjct 1941 GATCCCTTCTATGGAATCTGAGCACATTGTTAGAAGAAAACATGAAGACAATTGAGGCCT 2000 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | || | ||| |||||| || ||||| ||||| |||| | ||||||| | || Sbjct 2001 TGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAAAG 2060 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 ||| || ||||||||||||| ||||| || | |||||||||||| ||||| | ||| Sbjct 2061 ATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTCAT 2120 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 | |||||| |||||||||||| ||||||| ||||| ||||| | || || || Sbjct 2121 AAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCGCTC 2180 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 ||| |||||||| ||||| || |||||| ||| ||| || ||||| ||| ||||| Sbjct 2181 CAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATAGATGAATT 2239 Score = 338 bits (374), Expect = 8e-88 Identities = 658/966 (68%), Gaps = 34/966 (4%) Strand=Plus/Plus Query 62031 TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTAC 62090 |||| ||||| | |||||||| || | | || |||||||| ||||||| ||||||| Sbjct 263 TTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTAC 322 Query 62091 ATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAA 62150 ||||| ||||| ||||| | |||| |||| |||||||| |||| ||| ||| Sbjct 323 ATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAG 382 Query 62151 CTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCT 62210 | || ||||||| ||| ||||| | || ||||||||||| || || || || || || Sbjct 383 TTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCA 442 Query 62211 GCAGCCATTTTTATGATCGTCTTTTGTGCA-ATTTCCCAAATAGTTTTATAAACTCGCTT 62269 |||||||||| || | | ||| || | |||||||||| ||||||||||| | | Sbjct 443 GCAGCCATTTGAATTGTAGA-TTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCT 501 Query 62270 AATATCTTCTGGAAGGTTT--GTATTCT-GAATGGATCCACCATCTACCATAATCCTATT 62326 |||| | |||||| || | |||| | || || |||| | | ||||| || Sbjct 502 GATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTT 561 Query 62327 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAAC 62386 || || ||||| | |||||| | ||| ||||| | | || | ||| |||| || Sbjct 562 TTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTAC 621 Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 |||||||| || ||||| ||||||| || | |||||||| ||||| ||||| | Sbjct 622 AACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAA 681 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||| ||||||||||||||||||||||| ||||| ||||| ||||| | |||||| Sbjct 682 TGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAA 741 Query 62507 ACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 |||||| | || ||| | | |||||||| |||||| || ||||| ||| | | Sbjct 742 TGAATTTCTTACTCC--ATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAA 799 Query 62565 TCCGACG-------GTACAACANNNNNNNNNNNATATTGTAGAATACCGTT----ACTGG 62613 || | | || | ||| |||||||| || || || ||||| Sbjct 800 TCAGTTGGGGTTTTGTCCCACA-------TATCATATTGTAAGATTCCTTTGCTAACTGG 852 Query 62614 CGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCT 62673 | ||| ||||||| ||||| | || || || ||||| |||| |||||| || | Sbjct 853 GCT----TCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTT 908 Query 62674 CTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGC 62733 | | || || |||||||| || ||||| || | || ||| || || || | | Sbjct 909 CAAGAGCTCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCAC 968 Query 62734 TATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGA 62793 | || | |||||| | ||||| || || || | || ||||| ||||| || |||| Sbjct 969 TTTCGTAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGA 1028 Query 62794 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62853 |||| || || | ||| || || |||||| || | ||||||||||||| ||||| Sbjct 1029 TAGGCCTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTA 1088 Query 62854 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62913 | ||||| || | ||||||| || | ||| || || |||| ||| | |||||| Sbjct 1089 TTATTTTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCAT 1148 Query 62914 AT---CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTA 62970 || || || | ||| | || || | ||| | || || | |||||| ||||| | Sbjct 1149 ATTTACGATCAGCAGTTATATACTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGA 1208 Query 62971 CCTCAT 62976 |||| Sbjct 1209 TTTCAT 1214 >seq55846 Length=11783 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 28705 TTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAATATGTGT 28764 ||| || || || ||||| || ||||||||||| || || ||||| | |||| ||| Sbjct 10817 TTCTTTAACTTGTGTTAGAGACCTCCAATCCATATTCGCACTTCCAATGTAAAAGTGTTG 10876 Query 28765 ATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 28804 |||||||| |||||||| || || ||||||||||| ||| Sbjct 10877 ATTATCAGCTATCCAAATCTTAGTGTGAAGAACTCCGCCT 10916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627998678898480