Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 416 4e-111
seq55846 82.4 1e-10
>seq54449
Length=2482
Score = 416 bits (460), Expect = 4e-111
Identities = 677/960 (71%), Gaps = 21/960 (2%)
Strand=Plus/Plus
Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008
|| || | |||||| ||||| | |||| | | | | ||| | || || ||||||||
Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350
Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068
|||||||||||||| || || || | ||||||||||||||||||| |||| || |||||
Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410
Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128
|| || | || ||||||| |||||||| | || || || ||||| || | |||||
Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGT 1470
Query 63129 ACTCGAGCCTTTATTATAGA-TTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCG 63187
| |||| |||||| | |||| | ||||| | |||| || | |||| | |
Sbjct 1471 TGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCAT-TTTCATACTTAATATAGAGTTT 1529
Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247
|| || || || |||||||||| || ||||| ||||||| | |||||||| | ||
Sbjct 1530 CTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGAGA 1589
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306
||| ||| ||||| ||| || ||||||||||| | ||| |||||||| | ||| || ||
Sbjct 1590 CCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAGAA 1649
Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366
| |||||||| | || | || || |||||||| || || || | ||| | || | |
Sbjct 1650 A-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAATTCAA 1708
Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426
|||||| |||||||| |||||||| || || || | ||||||||| ||||| ||||
Sbjct 1709 AAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCCTC 1768
Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486
| ||||||| |||| || ||||| | ||||| ||||| |||| | ||| ||||
Sbjct 1769 CTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATTTG 1828
Query 63487 ATATACCATTGGTACCGGAGATATAGC--CTCCACTGGCACGAATA----TTACTAATTG 63540
| | ||||| || || || ||||| || | || |||||| ||| |||
Sbjct 1829 AAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTAC--ATT- 1883
Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT--A 63598
|| || ||||| ||||| || || || | || ||| | || |||| | | | |
Sbjct 1884 -TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACG-GACTTGAA 1940
Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658
||| ||||||||| ||| | ||| | || |||||||| ||||| ||| | |
Sbjct 1941 GATCCCTTCTATGGAATCTGAGCACATTGTTAGAAGAAAACATGAAGACAATTGAGGCCT 2000
Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718
| || | ||| |||||| || ||||| ||||| |||| | ||||||| | ||
Sbjct 2001 TGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAAAG 2060
Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778
||| || ||||||||||||| ||||| || | |||||||||||| ||||| | |||
Sbjct 2061 ATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTCAT 2120
Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838
| |||||| |||||||||||| ||||||| ||||| ||||| | || || ||
Sbjct 2121 AAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCGCTC 2180
Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898
||| |||||||| ||||| || |||||| ||| ||| || ||||| ||| |||||
Sbjct 2181 CAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATAGATGAATT 2239
Score = 338 bits (374), Expect = 8e-88
Identities = 658/966 (68%), Gaps = 34/966 (4%)
Strand=Plus/Plus
Query 62031 TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTAC 62090
|||| ||||| | |||||||| || | | || |||||||| ||||||| |||||||
Sbjct 263 TTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTAC 322
Query 62091 ATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAA 62150
||||| ||||| ||||| | |||| |||| |||||||| |||| ||| |||
Sbjct 323 ATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAG 382
Query 62151 CTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCT 62210
| || ||||||| ||| ||||| | || ||||||||||| || || || || || ||
Sbjct 383 TTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCA 442
Query 62211 GCAGCCATTTTTATGATCGTCTTTTGTGCA-ATTTCCCAAATAGTTTTATAAACTCGCTT 62269
|||||||||| || | | ||| || | |||||||||| ||||||||||| | |
Sbjct 443 GCAGCCATTTGAATTGTAGA-TTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCT 501
Query 62270 AATATCTTCTGGAAGGTTT--GTATTCT-GAATGGATCCACCATCTACCATAATCCTATT 62326
|||| | |||||| || | |||| | || || |||| | | ||||| ||
Sbjct 502 GATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTT 561
Query 62327 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAAC 62386
|| || ||||| | |||||| | ||| ||||| | | || | ||| |||| ||
Sbjct 562 TTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTAC 621
Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446
|||||||| || ||||| ||||||| || | |||||||| ||||| ||||| |
Sbjct 622 AACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAA 681
Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506
|| ||||| ||||||||||||||||||||||| ||||| ||||| ||||| | ||||||
Sbjct 682 TGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAA 741
Query 62507 ACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564
|||||| | || ||| | | |||||||| |||||| || ||||| ||| | |
Sbjct 742 TGAATTTCTTACTCC--ATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAA 799
Query 62565 TCCGACG-------GTACAACANNNNNNNNNNNATATTGTAGAATACCGTT----ACTGG 62613
|| | | || | ||| |||||||| || || || |||||
Sbjct 800 TCAGTTGGGGTTTTGTCCCACA-------TATCATATTGTAAGATTCCTTTGCTAACTGG 852
Query 62614 CGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCT 62673
| ||| ||||||| ||||| | || || || ||||| |||| |||||| || |
Sbjct 853 GCT----TCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTT 908
Query 62674 CTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGC 62733
| | || || |||||||| || ||||| || | || ||| || || || | |
Sbjct 909 CAAGAGCTCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCAC 968
Query 62734 TATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGA 62793
| || | |||||| | ||||| || || || | || ||||| ||||| || ||||
Sbjct 969 TTTCGTAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGA 1028
Query 62794 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62853
|||| || || | ||| || || |||||| || | ||||||||||||| |||||
Sbjct 1029 TAGGCCTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTA 1088
Query 62854 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62913
| ||||| || | ||||||| || | ||| || || |||| ||| | ||||||
Sbjct 1089 TTATTTTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCAT 1148
Query 62914 AT---CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTA 62970
|| || || | ||| | || || | ||| | || || | |||||| ||||| |
Sbjct 1149 ATTTACGATCAGCAGTTATATACTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGA 1208
Query 62971 CCTCAT 62976
||||
Sbjct 1209 TTTCAT 1214
>seq55846
Length=11783
Score = 82.4 bits (90), Expect = 1e-10
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 28705 TTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAATATGTGT 28764
||| || || || ||||| || ||||||||||| || || ||||| | |||| |||
Sbjct 10817 TTCTTTAACTTGTGTTAGAGACCTCCAATCCATATTCGCACTTCCAATGTAAAAGTGTTG 10876
Query 28765 ATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 28804
|||||||| |||||||| || || ||||||||||| |||
Sbjct 10877 ATTATCAGCTATCCAAATCTTAGTGTGAAGAACTCCGCCT 10916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627998678898480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |