Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 327 1e-84
seq47247 82.4 7e-11
>seq54449
Length=2482
Score = 327 bits (362), Expect = 1e-84
Identities = 602/874 (69%), Gaps = 19/874 (2%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||| ||||||| ||||| ||| | || | |||||| | | ||| |||||||| |||
Sbjct 272 TCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTACATTCCTGTT 331
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || |||||| |||| |||| |||||||| || | |||| | || | || |
Sbjct 332 TTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAGTTTGGTTCT 391
Query 36910 TCTATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967
||| || |||||| | ||| ||||||||||| ||||| |||||||| || || ||||
Sbjct 392 GCTACATGAATATTG--AATGACTGACTTTGATCAATAAAAGCACCTCTATCAGCAGCCA 449
Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027
||| | || |||| ||||| |||||||| |||||||| | || | | ||||
Sbjct 450 TTTGAATTGTAGATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCTGATATGTG 509
Query 37028 CTGGTAAATCT----AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083
|||| || ||| | | ||| ||||||||| | | | | |||| || || ||
Sbjct 510 CTGG-AATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTTTTTCATA 568
Query 37084 TCATTATTCCACATATTT--CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141
|||| | ||| | || || || | ||| || | | | || | |||||||| |
Sbjct 569 TCATCGTCCCATAAATCAAGCT-CTGTTAAGTCCT-TGAGCAAATGGTGGTTTACAACTT 626
Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201
| || || ||||||||||||| | |||| ||||| |||||||||||| | || |
Sbjct 627 GGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAATGATT 686
Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261
|||| || | || ||||||| || || ||||| ||||||||||| || | | ||
Sbjct 687 CATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAATGAAT 746
Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321
|||| | |||||| || ||| | | ||||| | | ||||||||| ||||| ||||
Sbjct 747 TTCTTACTCCATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAATCAGTTG 806
Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381
|| | || ||||||||||||||||| || ||||| || |||| | | |||||
Sbjct 807 GGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCTTCCCTCATATG 866
Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441
| ||||||| || | ||| ||| ||||| ||||| | ||| || || ||||||| |
Sbjct 867 TTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGCTCCATAATAAA 926
Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501
|||| || || ||||| ||| | | | || | ||| || ||| | | ||| | ||
Sbjct 927 TTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCACTTTCGTAAGGATAACGCA 986
Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561
| || || |||||| ||||| || |||||||| || || || || || ||
Sbjct 987 TAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGCCTGTGACGTAAAT 1046
Query 37562 TAGA---TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGAT 37618
| || |||| | ||| || |||||||||||| | |||||||||||| |||| ||
Sbjct 1047 TTGACTTTCTA---GCTTCAGGCAATGGATAATAATTAACATCTATTATTTTGTTTAAAT 1103
Query 37619 TTTTAACTAGTATTTTCGTAATTATTCTCAACTT 37652
|| | || ||||| |||| | | |||| ||
Sbjct 1104 TTCTGGTTATAATTTTTGTAACTTCTTTCAATTT 1137
Score = 262 bits (290), Expect = 4e-65
Identities = 634/943 (67%), Gaps = 25/943 (3%)
Strand=Plus/Plus
Query 37703 CTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGAT 37762
||| |||||| || || | ||||||| | | | | || || || || |||||||
Sbjct 1295 CTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAGAGAT 1354
Query 37763 TACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTAT 37822
|||| | ||||||| || | ||| |||||| ||| | || |||| |||||| |
Sbjct 1355 TACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCTTTGT 1414
Query 37823 ATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTC 37882
| | ||||| || ||||| ||||| ||| | ||| ||||| | | || | | ||
Sbjct 1415 ACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACC--AGAGTTG 1472
Query 37883 TT--GCTTTAACGATCGCTTTAAtttttttCTT-TGTTTCGTATTCTATATATAATTTGT 37939
|| ||||| | || || | |||| ||| |||| || | ||||| | ||| |
Sbjct 1473 TTGAGCTTTTATTTTC-CTGTTTGCTTTTCCTTCATTTTCATACTTAATATAGAGTTTCT 1531
Query 37940 TAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACC 37999
||| || | ||||| |||||| ||||| ||||||| | |||||||| |||||||
Sbjct 1532 CAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGAGACC 1591
Query 38000 ATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AAT 38058
| ||||| || || || |||| |||||| ||||| || | |||||| || ||| ||
Sbjct 1592 AATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGC-GTAGAAA 1650
Query 38059 AAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTT-AAGCTTAGAAAATCGAA 38117
| |||| | | || | ||||| || ||| || |||||| || | ||| || ||
Sbjct 1651 AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTT-TTTCTTCAAATCCAAAAATTCAAA 1709
Query 38118 TATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCC 38177
||||| | ||||| ||||| | |||||| | | |||||| || || || | |||||
Sbjct 1710 AATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCCTCC 1769
Query 38178 CTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGA 38237
|||| | ||||| | ||||| | | ||||||||| || |||| |||||| ||
Sbjct 1770 TTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATTTGA 1829
Query 38238 TTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATA----TTACTTATCGACA 38293
| || || | || | ||| || || ||||| || ||| ||| | | |
Sbjct 1830 AGTTCCATTAGTTCCAGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTACATTT----A 1885
Query 38294 ATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTA-TCAAATATA 38352
|||| ||||| |||||| || || || | ||| ||||| || |||| | | || ||
Sbjct 1886 ATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACGGACTTGAAGATC 1944
Query 38353 CCTTCTAT--ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATG 38410
|||||||| | | | | | |||| ||| | |||||| ||||| ||||||| ||
Sbjct 1945 CCTTCTATGGAATCTGAGC--ACATTGTTAGAAGAAAACATGAAGACAATTGAGGCCTTG 2002
Query 38411 GAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470
| || | || |||||| || ||||| || || || || | |||| || ||| ||
Sbjct 2003 GTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAAAGAT 2062
Query 38471 TATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTA 38530
||||||| || || | ||||||| || || ||||| |||| || || ||||| |
Sbjct 2063 TATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTCATAA 2122
Query 38531 GCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTA 38590
|||| ||||| |||||||| ||||| ||| || | ||||| || || |
Sbjct 2123 GCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCGCTCCA 2182
Query 38591 ATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633
||||||| | |||||| ||| | ||| | || ||||||| ||
Sbjct 2183 ATGTTTTAAATCCAAAGTAATTGTATCCA-AAACTCTATCATA 2224
>seq47247
Length=7776
Score = 82.4 bits (90), Expect = 7e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 108234 CTTATTCGTCAAGCTAATGAAGGTAGACGAAAAGGAGGTGGTATTAAGTTT-GGTGAAAT 108292
||| ||||||| ||| ||||||||| | || || ||| ||| |||| ||||||||
Sbjct 7336 CTTGTTCGTCAGCCTATGGAAGGTAGAGCTAGAGATGGAGGT-TTACGTTTTGGTGAAAT 7394
Query 108293 GGAAAGAGATTGTCTAATAGCTCATGGTGCTGCA 108326
|||||||||||||| ||| |||||||| ||||||
Sbjct 7395 GGAAAGAGATTGTCAAATTGCTCATGGAGCTGCA 7428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467171694521040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |