Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq54449 327 1e-84 seq47247 82.4 7e-11 >seq54449 Length=2482 Score = 327 bits (362), Expect = 1e-84 Identities = 602/874 (69%), Gaps = 19/874 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||||| ||||| ||| | || | |||||| | | ||| |||||||| ||| Sbjct 272 TCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTACATTCCTGTT 331 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || |||||| |||| |||| |||||||| || | |||| | || | || | Sbjct 332 TTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAGTTTGGTTCT 391 Query 36910 TCTATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967 ||| || |||||| | ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 392 GCTACATGAATATTG--AATGACTGACTTTGATCAATAAAAGCACCTCTATCAGCAGCCA 449 Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 ||| | || |||| ||||| |||||||| |||||||| | || | | |||| Sbjct 450 TTTGAATTGTAGATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCTGATATGTG 509 Query 37028 CTGGTAAATCT----AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 |||| || ||| | | ||| ||||||||| | | | | |||| || || || Sbjct 510 CTGG-AATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTTTTTCATA 568 Query 37084 TCATTATTCCACATATTT--CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 |||| | ||| | || || || | ||| || | | | || | |||||||| | Sbjct 569 TCATCGTCCCATAAATCAAGCT-CTGTTAAGTCCT-TGAGCAAATGGTGGTTTACAACTT 626 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 | || || ||||||||||||| | |||| ||||| |||||||||||| | || | Sbjct 627 GGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAATGATT 686 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 |||| || | || ||||||| || || ||||| ||||||||||| || | | || Sbjct 687 CATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAATGAAT 746 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 |||| | |||||| || ||| | | ||||| | | ||||||||| ||||| |||| Sbjct 747 TTCTTACTCCATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAATCAGTTG 806 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 || | || ||||||||||||||||| || ||||| || |||| | | ||||| Sbjct 807 GGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCTTCCCTCATATG 866 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 | ||||||| || | ||| ||| ||||| ||||| | ||| || || ||||||| | Sbjct 867 TTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGCTCCATAATAAA 926 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 |||| || || ||||| ||| | | | || | ||| || ||| | | ||| | || Sbjct 927 TTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCACTTTCGTAAGGATAACGCA 986 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 | || || |||||| ||||| || |||||||| || || || || || || Sbjct 987 TAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGCCTGTGACGTAAAT 1046 Query 37562 TAGA---TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGAT 37618 | || |||| | ||| || |||||||||||| | |||||||||||| |||| || Sbjct 1047 TTGACTTTCTA---GCTTCAGGCAATGGATAATAATTAACATCTATTATTTTGTTTAAAT 1103 Query 37619 TTTTAACTAGTATTTTCGTAATTATTCTCAACTT 37652 || | || ||||| |||| | | |||| || Sbjct 1104 TTCTGGTTATAATTTTTGTAACTTCTTTCAATTT 1137 Score = 262 bits (290), Expect = 4e-65 Identities = 634/943 (67%), Gaps = 25/943 (3%) Strand=Plus/Plus Query 37703 CTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGAT 37762 ||| |||||| || || | ||||||| | | | | || || || || ||||||| Sbjct 1295 CTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAGAGAT 1354 Query 37763 TACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTAT 37822 |||| | ||||||| || | ||| |||||| ||| | || |||| |||||| | Sbjct 1355 TACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCTTTGT 1414 Query 37823 ATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTC 37882 | | ||||| || ||||| ||||| ||| | ||| ||||| | | || | | || Sbjct 1415 ACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACC--AGAGTTG 1472 Query 37883 TT--GCTTTAACGATCGCTTTAAtttttttCTT-TGTTTCGTATTCTATATATAATTTGT 37939 || ||||| | || || | |||| ||| |||| || | ||||| | ||| | Sbjct 1473 TTGAGCTTTTATTTTC-CTGTTTGCTTTTCCTTCATTTTCATACTTAATATAGAGTTTCT 1531 Query 37940 TAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACC 37999 ||| || | ||||| |||||| ||||| ||||||| | |||||||| ||||||| Sbjct 1532 CAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGAGACC 1591 Query 38000 ATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AAT 38058 | ||||| || || || |||| |||||| ||||| || | |||||| || ||| || Sbjct 1592 AATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGC-GTAGAAA 1650 Query 38059 AAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTT-AAGCTTAGAAAATCGAA 38117 | |||| | | || | ||||| || ||| || |||||| || | ||| || || Sbjct 1651 AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTT-TTTCTTCAAATCCAAAAATTCAAA 1709 Query 38118 TATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCC 38177 ||||| | ||||| ||||| | |||||| | | |||||| || || || | ||||| Sbjct 1710 AATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCCTCC 1769 Query 38178 CTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGA 38237 |||| | ||||| | ||||| | | ||||||||| || |||| |||||| || Sbjct 1770 TTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATTTGA 1829 Query 38238 TTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATA----TTACTTATCGACA 38293 | || || | || | ||| || || ||||| || ||| ||| | | | Sbjct 1830 AGTTCCATTAGTTCCAGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTACATTT----A 1885 Query 38294 ATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTA-TCAAATATA 38352 |||| ||||| |||||| || || || | ||| ||||| || |||| | | || || Sbjct 1886 ATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACGGACTTGAAGATC 1944 Query 38353 CCTTCTAT--ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATG 38410 |||||||| | | | | | |||| ||| | |||||| ||||| ||||||| || Sbjct 1945 CCTTCTATGGAATCTGAGC--ACATTGTTAGAAGAAAACATGAAGACAATTGAGGCCTTG 2002 Query 38411 GAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470 | || | || |||||| || ||||| || || || || | |||| || ||| || Sbjct 2003 GTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAAAGAT 2062 Query 38471 TATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTA 38530 ||||||| || || | ||||||| || || ||||| |||| || || ||||| | Sbjct 2063 TATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTCATAA 2122 Query 38531 GCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTA 38590 |||| ||||| |||||||| ||||| ||| || | ||||| || || | Sbjct 2123 GCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCGCTCCA 2182 Query 38591 ATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 ||||||| | |||||| ||| | ||| | || ||||||| || Sbjct 2183 ATGTTTTAAATCCAAAGTAATTGTATCCA-AAACTCTATCATA 2224 >seq47247 Length=7776 Score = 82.4 bits (90), Expect = 7e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 108234 CTTATTCGTCAAGCTAATGAAGGTAGACGAAAAGGAGGTGGTATTAAGTTT-GGTGAAAT 108292 ||| ||||||| ||| ||||||||| | || || ||| ||| |||| |||||||| Sbjct 7336 CTTGTTCGTCAGCCTATGGAAGGTAGAGCTAGAGATGGAGGT-TTACGTTTTGGTGAAAT 7394 Query 108293 GGAAAGAGATTGTCTAATAGCTCATGGTGCTGCA 108326 |||||||||||||| ||| |||||||| |||||| Sbjct 7395 GGAAAGAGATTGTCAAATTGCTCATGGAGCTGCA 7428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467171694521040