Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq229830 140 3e-28
seq160753 131 2e-25
seq80618 107 2e-18
>seq229830
Length=7395
Score = 140 bits (154), Expect = 3e-28
Identities = 172/230 (75%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || ||||||| || || |||||||||||||| |||||||||
Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| || | ||||| | ||||| ||||| |||||| ||||||||| || || ||
Sbjct 5725 AAAGTGCGTCCA-TCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 5667
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715
|| ||||| ||||| ||| |||| | |||| | | ||| | || |||| || || |
Sbjct 5666 GATTCCTTCCTTGTC-CTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 5608
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| | ||| | || || || ||||| || || ||||| || ||||||
Sbjct 5607 CCTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATA 5558
Score = 138 bits (152), Expect = 1e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| | ||| || ||||| || | ||||| ||||||||||||||||| || |
Sbjct 6013 CCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGAC 5954
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||||| |||||| | ||||| |||||| |||||| |||||| ||||| |||||
Sbjct 5953 AATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 5894
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||||||||| ||| || || | | ||| | |||||| | ||||| ||
Sbjct 5893 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACT 5834
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
|| | || | || || || ||||| ||||| ||||| ||||||||| ||
Sbjct 5833 TCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCATACCT 5783
Score = 129 bits (142), Expect = 6e-25
Identities = 170/232 (73%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | ||| | ||| ||||||| ||||| || ||||| || || || |||||
Sbjct 6240 CCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 6181
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| | |||||||| ||| |||| |||||||| ||||| |||||
Sbjct 6180 AAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGA 6122
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| | || | || | | ||| | |||||| | ||||| ||
Sbjct 6121 ATACCTTCTTTGTC-TTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAAC 6063
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
|| | ||| | ||||| || ||||| || || ||||| ||||||||| ||
Sbjct 6062 TTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCATACCT 6011
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || ||||| | ||||| ||||||||||||||||| |||||
Sbjct 165 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTA 106
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||||||||| || || ||| | || ||||| || ||||| |||||
Sbjct 105 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGA 46
Query 139658 ATGCCTTCTTTGTC 139671
|||||||| |||||
Sbjct 45 ATGCCTTCCTTGTC 32
>seq160753
Length=592
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| ||||||| || ||||| ||||| |||||||||||
Sbjct 365 CCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGAT 424
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||||| || | ||||| | ||||| ||||| |||||| |||||||||||| |||||
Sbjct 425 AATGTGCGTCCA-TCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGG 483
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| |||||||| || ||| || || | | ||| | |||||| | || || ||
Sbjct 484 GATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAAC 543
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| ||| | || ||||| ||||| ||||| ||||| || ||||||
Sbjct 544 TTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCATA 592
Score = 125 bits (138), Expect = 7e-24
Identities = 171/231 (74%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || || |||| || ||||| ||||||||||||||||| |
Sbjct 137 CCACCACGGAGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGAC 196
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||||| || | ||||| | ||| || || || |||||| |||||| ||||| |||||
Sbjct 197 AATGTGCGTCCA-TCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGG 255
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714
|| ||||| || || ||| | || | ||| | |||| || | ||||| | |||||
Sbjct 256 GATACCTTCCTTATC-TTGAATCTTAGCCTTAAC-GTTCTCAATGGTGTCTGATGGCTCA 313
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| |||| ||| | || || || ||||| ||||| ||||| || ||||||
Sbjct 314 ACTTCAAGGGTGATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCATA 364
>seq80618
Length=357
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || ||||||| ||||| || ||||| ||||| || ||| |
Sbjct 350 CCACCACGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 291
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| || | ||||| | || || || || |||||| |||||| ||||| || ||
Sbjct 290 AAGGTGCGTCCA-TCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGG 232
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| || || | | ||| | ||||||| || || ||
Sbjct 231 GATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAAC 172
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||| || ||||| || || ||||| || |||||
Sbjct 171 TTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494631360967200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |