Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 421 1e-112
>seq54449
Length=2482
Score = 421 bits (466), Expect = 1e-112
Identities = 676/955 (71%), Gaps = 27/955 (3%)
Strand=Plus/Plus
Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680
|| || | |||||||||||| | |||| | | | | ||| | || ||||||||||||
Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350
Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740
|| |||||||||||||| || || | ||||||||||||||||||| |||| || |||||
Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410
Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800
|| || | || | ||||| |||||||| | || || || ||||| || | |||||
Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGT 1470
Query 79801 ACTCGAGCCTTTATTATAGACTTGTAT-CTCTT--TTCTCTTTCGTATTGTGTATATAAT 79857
| |||| |||||| | | ||| | || || ||| |||| || | |||| | |
Sbjct 1471 TGTTGAGCTTTTATTTT---CCTGTTTGCTTTTCCTTCATTTTCATACTTAATATAGAGT 1527
Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917
|| || || || ||||||||||||| ||||| ||||||| || ||||||||| |
Sbjct 1528 TTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGA 1587
Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TAT 79976
||||| ||| | ||| ||| || ||||||||||| | ||| |||||||| | ||| ||
Sbjct 1588 GACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAG 1647
Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036
||| |||||||| | || | ||| || |||||||| || || || | ||| | || |
Sbjct 1648 AAA-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAATTC 1706
Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096
| |||||| |||||||| |||||||| || || || | |||| || | ||||| ||
Sbjct 1707 AAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCC 1766
Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156
||| ||||||| |||| || ||||| | ||||| ||||| |||| | ||||||
Sbjct 1767 TCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATT 1826
Query 80157 GGATGTACCATTGGTCCCGGAGATATAGC--TTCCACTGGCACGAATA----TTACTAAT 80210
|| || ||||| || || || ||||| | || | || |||||| ||| ||
Sbjct 1827 TGAAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTAC--AT 1882
Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA-TCAT 80269
| || || ||||| ||||| || || || | || ||| | || |||| | |
Sbjct 1883 T--TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACGGACTTGA 1939
Query 80270 AGATGCCCTCTATGCTATC--ATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 80327
|||| || |||||| ||| | || ||| | || |||||||| ||||| ||| |
Sbjct 1940 AGATCCCTTCTATGGAATCTGAGCA--CATTGTTAGAAGAAAACATGAAGACAATTGAGG 1997
Query 80328 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 80387
| || | ||| |||||| || ||||| ||||| |||| | ||||||| |
Sbjct 1998 CCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAA 2057
Query 80388 TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACG 80447
||||| || ||||||||||||| ||||| || | |||||||||||| ||||| |
Sbjct 2058 AAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCT 2117
Query 80448 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTT 80507
||| | |||||| |||||||||||| | || || |||||| ||||| | || ||
Sbjct 2118 CATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCG 2177
Query 80508 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 80562
||||| |||||||| ||||| || |||||| ||| ||| || ||||| |||
Sbjct 2178 CTCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATA 2231
Score = 401 bits (444), Expect = 9e-107
Identities = 667/956 (70%), Gaps = 12/956 (1%)
Strand=Plus/Plus
Query 78702 CTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTA 78761
||||| ||||| | |||||||| || | | || |||||||| ||||||| ||||||
Sbjct 262 CTTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTA 321
Query 78762 CATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATA 78821
|||||| ||||| ||||| | |||| ||||||||||||| |||| ||| |||
Sbjct 322 CATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATA 381
Query 78822 ACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTC 78881
| || ||||||| ||| ||||| | || ||||||||||| || || || || || ||
Sbjct 382 GTTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATC 441
Query 78882 TGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCT 78940
|||||||||| || | | ||| |||| |||||||||| ||||||||||| |
Sbjct 442 AGCAGCCATTTGAATTGTAG-ATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTC 500
Query 78941 TAATATCTTCTGGAA-GGTTTGTATT--CTGAATGGATCCACCATCTGCCATAATCCTAT 78997
| |||| | |||||| ||| ||| || || || |||| | || ||||| |
Sbjct 501 TGATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGT 560
Query 78998 TCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 79057
| || || || || | |||||| | ||| ||||| | | || | ||| | || |
Sbjct 561 TTTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTA 620
Query 79058 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCA 79117
| ||||| || || ||||| ||||||| || | |||||||| ||||||||||| |
Sbjct 621 CAACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGA 680
Query 79118 CCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATA 79177
|||||||| ||||||||||||||||||||||| || |||||||| ||||| | |||||
Sbjct 681 ATGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATA 740
Query 79178 AACTATTTCTAAGACCGTATGATC--TGATTTTATCTTTTAGAGATTCCCAATCCCAAAG 79235
| |||||| | || |||| | | |||||||| ||||||| || ||||||||| |
Sbjct 741 ATGAATTTCTTACTCC--ATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAA 798
Query 79236 ATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCC 79295
||||| ||| | ||| | ||||||||||| || || || ||| | |||
Sbjct 799 ATCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCTTCC 858
Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355
||||||||||||| || || ||||| || | ||||||||| || || | |||||
Sbjct 859 CTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGCTCC 918
Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415
|||||||| || || || || | || ||| || || || | | || || | ||
Sbjct 919 ATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCACTTTCGTAAGG 978
Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475
|||| | ||||| || || || | || ||||| ||||| || |||||||| || ||
Sbjct 979 ATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGCCTGTG 1038
Query 79476 TCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 79535
| ||| || || |||||| || | ||||||||||||| |||||| ||||| ||
Sbjct 1039 ACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTATTTTGTT 1098
Query 79536 GAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT---CGTCC 79592
| ||| ||| ||| | ||| || || || | ||| | |||||| || || |
Sbjct 1099 TAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCATATTTACGATC 1158
Query 79593 ATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT 79648
| | ||| | || || | || | || || | |||||||||||| | ||||
Sbjct 1159 AGCAGTTATATACTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCAT 1214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716194430727240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |