Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq54449 421 1e-112 >seq54449 Length=2482 Score = 421 bits (466), Expect = 1e-112 Identities = 676/955 (71%), Gaps = 27/955 (3%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || || | |||||||||||| | |||| | | | | ||| | || |||||||||||| Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 || |||||||||||||| || || | ||||||||||||||||||| |||| || ||||| Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || || | || | ||||| |||||||| | || || || ||||| || | ||||| Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGT 1470 Query 79801 ACTCGAGCCTTTATTATAGACTTGTAT-CTCTT--TTCTCTTTCGTATTGTGTATATAAT 79857 | |||| |||||| | | ||| | || || ||| |||| || | |||| | | Sbjct 1471 TGTTGAGCTTTTATTTT---CCTGTTTGCTTTTCCTTCATTTTCATACTTAATATAGAGT 1527 Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917 || || || || ||||||||||||| ||||| ||||||| || ||||||||| | Sbjct 1528 TTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGA 1587 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TAT 79976 ||||| ||| | ||| ||| || ||||||||||| | ||| |||||||| | ||| || Sbjct 1588 GACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAG 1647 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 ||| |||||||| | || | ||| || |||||||| || || || | ||| | || | Sbjct 1648 AAA-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAATTC 1706 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | |||||| |||||||| |||||||| || || || | |||| || | ||||| || Sbjct 1707 AAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCC 1766 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 ||| ||||||| |||| || ||||| | ||||| ||||| |||| | |||||| Sbjct 1767 TCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATT 1826 Query 80157 GGATGTACCATTGGTCCCGGAGATATAGC--TTCCACTGGCACGAATA----TTACTAAT 80210 || || ||||| || || || ||||| | || | || |||||| ||| || Sbjct 1827 TGAAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTAC--AT 1882 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA-TCAT 80269 | || || ||||| ||||| || || || | || ||| | || |||| | | Sbjct 1883 T--TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACGGACTTGA 1939 Query 80270 AGATGCCCTCTATGCTATC--ATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 80327 |||| || |||||| ||| | || ||| | || |||||||| ||||| ||| | Sbjct 1940 AGATCCCTTCTATGGAATCTGAGCA--CATTGTTAGAAGAAAACATGAAGACAATTGAGG 1997 Query 80328 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 80387 | || | ||| |||||| || ||||| ||||| |||| | ||||||| | Sbjct 1998 CCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAA 2057 Query 80388 TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACG 80447 ||||| || ||||||||||||| ||||| || | |||||||||||| ||||| | Sbjct 2058 AAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCT 2117 Query 80448 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTT 80507 ||| | |||||| |||||||||||| | || || |||||| ||||| | || || Sbjct 2118 CATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCG 2177 Query 80508 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 80562 ||||| |||||||| ||||| || |||||| ||| ||| || ||||| ||| Sbjct 2178 CTCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATA 2231 Score = 401 bits (444), Expect = 9e-107 Identities = 667/956 (70%), Gaps = 12/956 (1%) Strand=Plus/Plus Query 78702 CTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTA 78761 ||||| ||||| | |||||||| || | | || |||||||| ||||||| |||||| Sbjct 262 CTTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTA 321 Query 78762 CATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATA 78821 |||||| ||||| ||||| | |||| ||||||||||||| |||| ||| ||| Sbjct 322 CATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATA 381 Query 78822 ACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTC 78881 | || ||||||| ||| ||||| | || ||||||||||| || || || || || || Sbjct 382 GTTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATC 441 Query 78882 TGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCT 78940 |||||||||| || | | ||| |||| |||||||||| ||||||||||| | Sbjct 442 AGCAGCCATTTGAATTGTAG-ATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTC 500 Query 78941 TAATATCTTCTGGAA-GGTTTGTATT--CTGAATGGATCCACCATCTGCCATAATCCTAT 78997 | |||| | |||||| ||| ||| || || || |||| | || ||||| | Sbjct 501 TGATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGT 560 Query 78998 TCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 79057 | || || || || | |||||| | ||| ||||| | | || | ||| | || | Sbjct 561 TTTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTA 620 Query 79058 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCA 79117 | ||||| || || ||||| ||||||| || | |||||||| ||||||||||| | Sbjct 621 CAACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGA 680 Query 79118 CCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATA 79177 |||||||| ||||||||||||||||||||||| || |||||||| ||||| | ||||| Sbjct 681 ATGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATA 740 Query 79178 AACTATTTCTAAGACCGTATGATC--TGATTTTATCTTTTAGAGATTCCCAATCCCAAAG 79235 | |||||| | || |||| | | |||||||| ||||||| || ||||||||| | Sbjct 741 ATGAATTTCTTACTCC--ATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAA 798 Query 79236 ATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCC 79295 ||||| ||| | ||| | ||||||||||| || || || ||| | ||| Sbjct 799 ATCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCTTCC 858 Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 ||||||||||||| || || ||||| || | ||||||||| || || | ||||| Sbjct 859 CTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGCTCC 918 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 |||||||| || || || || | || ||| || || || | | || || | || Sbjct 919 ATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCACTTTCGTAAGG 978 Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 |||| | ||||| || || || | || ||||| ||||| || |||||||| || || Sbjct 979 ATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGCCTGTG 1038 Query 79476 TCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 79535 | ||| || || |||||| || | ||||||||||||| |||||| ||||| || Sbjct 1039 ACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTATTTTGTT 1098 Query 79536 GAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT---CGTCC 79592 | ||| ||| ||| | ||| || || || | ||| | |||||| || || | Sbjct 1099 TAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCATATTTACGATC 1158 Query 79593 ATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT 79648 | | ||| | || || | || | || || | |||||||||||| | |||| Sbjct 1159 AGCAGTTATATACTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCAT 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716194430727240