Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq229830 122 7e-23 seq160753 104 2e-17 >seq229830 Length=7395 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || | ||| || ||||||| || || ||||| | || || || ||| Sbjct 6013 CCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGAC 5954 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| ||| |||| |||||||||||||| ||||| ||||| || |||||||| | || Sbjct 5953 AATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 5894 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | || || | ||| |||||| || ||| || Sbjct 5893 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACT 5834 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || | ||||| || ||||||||||| Sbjct 5833 TCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||||| || | ||| |||||||| | |||||| ||| Sbjct 6240 CCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 6181 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||||||||| |||||||| || | || || ||||| | || Sbjct 6180 AAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGA 6122 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| | ||||| | ||| |||||| | ||| || Sbjct 6121 ATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACT 6062 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| ||||| || | ||| || || || |||||||| Sbjct 6061 TCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | ||| ||||||||| | || ||||| |||||||| ||| | || ||| Sbjct 7385 ACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGACAATGTGCGTCCATCTTCC 7326 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 ||||||||||| || |||||||| || |||||||| Sbjct 7325 AATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 7291 >seq160753 Length=592 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | || ||||||||| | || ||||| ||| Sbjct 137 CCACCACGGAGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGAC 196 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| ||| | || ||||| || || ||||| || ||||| || |||||||| | || Sbjct 197 AATGTGCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGG 256 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| | || || | ||| ||||| | ||| || Sbjct 257 ATACCTTCCTTATCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACT 316 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || | |||||| || ||||| ||||| Sbjct 317 TCAAGGGTGATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | ||| ||||||||| | || ||||| || Sbjct 365 CCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGAT 424 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| ||| | || |||||||||||||| || || ||||| || || ||||| | || Sbjct 425 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGG 484 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| |||||| | || || Sbjct 485 ATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACT 544 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || | ||||| || || || ||||| Sbjct 545 TCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380295734832378