Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq54449 392 4e-104 >seq54449 Length=2482 Score = 392 bits (434), Expect = 4e-104 Identities = 675/962 (70%), Gaps = 25/962 (3%) Strand=Plus/Plus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || || | |||||||||||| | |||| | | | | ||| | || ||||||||||| Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 |||||||||||||| || || || | ||||||||||||||||||| |||| || ||||| Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || | ||| | ||||| |||||||| | || || || ||||| || | ||||| Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGT 1470 Query 71884 ACTCGAGCCTTTATTATATTCTTGTAT-CTCTT--TTCTCTTTCGTATTGTGTATATAAT 71940 | |||| |||||| ||| ||| | || || ||| |||| || | |||| | | Sbjct 1471 TGTTGAGCTTTTATT---TTCCTGTTTGCTTTTCCTTCATTTTCATACTTAATATAGAGT 1527 Query 71941 CGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAAT 72000 || || || || |||||| ||| || ||||| ||||||| | |||||||| | Sbjct 1528 TTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGA 1587 Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TAT 72059 ||||| ||| | ||| | | || ||||||||||| | ||| |||||||| | ||| || Sbjct 1588 GACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAG 1647 Query 72060 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 72119 ||| |||||||| | || | ||| || |||||||| || || || | ||| | || | Sbjct 1648 AAA-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAATTC 1706 Query 72120 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCC 72179 | |||||| |||||||| |||||||| || || || | |||| |||| ||||| || Sbjct 1707 AAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCC 1766 Query 72180 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 72239 ||| ||||||| |||| || ||||| | ||||| ||||| |||| | |||||| Sbjct 1767 TCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATT 1826 Query 72240 GGATGCACCATTGGTCCCGGAGATATAGC--TTCCACTGGCACGAAT--ATTGCTAATTG 72295 || | ||||| || || || ||||| | || | || ||||| | || ||| Sbjct 1827 TGAAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTACATT- 1883 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA-TCATAG 72354 || || ||||| ||||| || || || | || ||| | || |||| | | || Sbjct 1884 -TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACGGACTTGAAG 1941 Query 72355 ATGCCCTCTAT--ACTATCATC-CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 72411 || || ||||| | | | | | ||| |||| || |||||||| ||||| ||| | Sbjct 1942 ATCCCTTCTATGGAATCTGAGCACAT--TGTT-AGAAGAAAACATGAAGACAATTGAGGC 1998 Query 72412 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 72471 | || | ||| |||||| || ||||| ||||| |||| | ||||||| | Sbjct 1999 CTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAA 2058 Query 72472 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGC 72531 ||||| || ||||||||||||| ||||| || | ||| |||||||| ||||| | | Sbjct 2059 AGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTC 2118 Query 72532 ATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTT 72591 || | ||| || |||||||||||| | || || |||||| ||||| | || || Sbjct 2119 ATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCGC 2178 Query 72592 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAA 72651 ||||| |||||||| ||||| || |||||| ||| ||| || ||||| ||| ||| Sbjct 2179 TCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATAGATGAA 2237 Query 72652 TT 72653 || Sbjct 2238 TT 2239 Score = 333 bits (368), Expect = 4e-86 Identities = 589/861 (68%), Gaps = 5/861 (1%) Strand=Plus/Plus Query 70822 GCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAA 70881 |||| ||| ||||||| ||||||||| |||||||| ||||| | |||| |||| ||| Sbjct 299 GCGGGTTTTGTACGTAAATAGTACATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAA 358 Query 70882 TGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTT 70941 ||||| |||| ||| |||| | || || |||| |||||||| | ||||||||| Sbjct 359 TGCATTGAAGTTAATTTTCCATAGTTTGGTTCTGCTACATGAATATTGAATGACTGACTT 418 Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTC 71000 ||||| || || || || || || |||||||||| || | | ||| |||| ||||| Sbjct 419 TGATCAATAAAAGCACCTCTATCAGCAGCCATTTGAATTGTAGA-TTTAATGGATATTTC 477 Query 71001 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTT--GTATTCT-GAATGGA 71057 ||||| ||||||||||| | | |||| | |||||| || | |||| | || || Sbjct 478 CCAAACAGTTTTATAAAGTTCTCTGATATGTGCTGGAATTCTTTCGATTTCTTGTATAGA 537 Query 71058 TCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 71117 |||| | || |||||| ||||| || || || | |||||| | ||| ||||| Sbjct 538 ACCACGTTTTGAAATAATTTCGTTTTTCATATCATCGTCCCATAAATCAAGCTCTGTTAA 597 Query 71118 AACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTA 71177 | | || | ||| | || || ||||| || || ||||| ||||||| ||| | || Sbjct 598 GTCCTTGAGCAAATGGTGGTTTACAACTTGGAACTCACCAGATAATACTCGACGGTTATA 657 Query 71178 AATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 71237 |||||| ||||| ||||| | ||| ||||| ||||||||||||||||||||||| || Sbjct 658 AATATTTGAAGTATATGGTTCGAATGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 717 Query 71238 AGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTT 71297 ||| ||||| ||||| | ||||| |||||| | ||||| |||||||| || Sbjct 718 AGTTGGCATTGGTGCAATCAATAATGAATTTCTTACTCCATGAACCTTTATTTTATCCTT 777 Query 71298 TAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNAT 71357 ||||| || ||||| ||| | ||| | ||| || Sbjct 778 TAGAGCTTGCCAATCCCACAAATCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGAT 837 Query 71358 GCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTC 71417 || || ||| | ||| ||||||| || || | || |||||||| || ||||| Sbjct 838 TCCTTTGCTAACTGGGCTTCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTC 897 Query 71418 ACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTG 71477 |||||| || || | |||||||||||||| || || || || | || ||| || || Sbjct 898 ACAACTTGCTTCAAGAGCTCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTG 957 Query 71478 TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 71537 || | || || | |||||| | ||||| || || || | || ||||| || Sbjct 958 AGCCTTTTCACTTTCGTAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTAC 1017 Query 71538 GCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATA 71597 || || |||||||| ||||| | ||| || || |||||| || | |||||||| Sbjct 1018 ACCGATCCCGATAGGCCTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATA 1077 Query 71598 ATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTT 71657 ||||| |||||| ||||| || | ||||||| ||| | ||| || || || | ||| Sbjct 1078 ATTAACATCTATTATTTTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTT 1137 Query 71658 GAGAAAATCAAATCTCCCATC 71678 | |||||| || | | ||| Sbjct 1138 TGGGAAATCATATTTACGATC 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669200941601160