Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 392 4e-104
>seq54449
Length=2482
Score = 392 bits (434), Expect = 4e-104
Identities = 675/962 (70%), Gaps = 25/962 (3%)
Strand=Plus/Plus
Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763
|| || | |||||||||||| | |||| | | | | ||| | || |||||||||||
Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350
Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823
|||||||||||||| || || || | ||||||||||||||||||| |||| || |||||
Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410
Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883
|| || | ||| | ||||| |||||||| | || || || ||||| || | |||||
Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGT 1470
Query 71884 ACTCGAGCCTTTATTATATTCTTGTAT-CTCTT--TTCTCTTTCGTATTGTGTATATAAT 71940
| |||| |||||| ||| ||| | || || ||| |||| || | |||| | |
Sbjct 1471 TGTTGAGCTTTTATT---TTCCTGTTTGCTTTTCCTTCATTTTCATACTTAATATAGAGT 1527
Query 71941 CGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAAT 72000
|| || || || |||||| ||| || ||||| ||||||| | |||||||| |
Sbjct 1528 TTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGA 1587
Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TAT 72059
||||| ||| | ||| | | || ||||||||||| | ||| |||||||| | ||| ||
Sbjct 1588 GACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAG 1647
Query 72060 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 72119
||| |||||||| | || | ||| || |||||||| || || || | ||| | || |
Sbjct 1648 AAA-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAATTC 1706
Query 72120 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCC 72179
| |||||| |||||||| |||||||| || || || | |||| |||| ||||| ||
Sbjct 1707 AAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCC 1766
Query 72180 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 72239
||| ||||||| |||| || ||||| | ||||| ||||| |||| | ||||||
Sbjct 1767 TCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATT 1826
Query 72240 GGATGCACCATTGGTCCCGGAGATATAGC--TTCCACTGGCACGAAT--ATTGCTAATTG 72295
|| | ||||| || || || ||||| | || | || ||||| | || |||
Sbjct 1827 TGAAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTACATT- 1883
Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA-TCATAG 72354
|| || ||||| ||||| || || || | || ||| | || |||| | | ||
Sbjct 1884 -TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACGGACTTGAAG 1941
Query 72355 ATGCCCTCTAT--ACTATCATC-CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 72411
|| || ||||| | | | | | ||| |||| || |||||||| ||||| ||| |
Sbjct 1942 ATCCCTTCTATGGAATCTGAGCACAT--TGTT-AGAAGAAAACATGAAGACAATTGAGGC 1998
Query 72412 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 72471
| || | ||| |||||| || ||||| ||||| |||| | ||||||| |
Sbjct 1999 CTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAA 2058
Query 72472 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGC 72531
||||| || ||||||||||||| ||||| || | ||| |||||||| ||||| | |
Sbjct 2059 AGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTC 2118
Query 72532 ATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTT 72591
|| | ||| || |||||||||||| | || || |||||| ||||| | || ||
Sbjct 2119 ATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCGC 2178
Query 72592 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAA 72651
||||| |||||||| ||||| || |||||| ||| ||| || ||||| ||| |||
Sbjct 2179 TCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATAGATGAA 2237
Query 72652 TT 72653
||
Sbjct 2238 TT 2239
Score = 333 bits (368), Expect = 4e-86
Identities = 589/861 (68%), Gaps = 5/861 (1%)
Strand=Plus/Plus
Query 70822 GCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAA 70881
|||| ||| ||||||| ||||||||| |||||||| ||||| | |||| |||| |||
Sbjct 299 GCGGGTTTTGTACGTAAATAGTACATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAA 358
Query 70882 TGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTT 70941
||||| |||| ||| |||| | || || |||| |||||||| | |||||||||
Sbjct 359 TGCATTGAAGTTAATTTTCCATAGTTTGGTTCTGCTACATGAATATTGAATGACTGACTT 418
Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTC 71000
||||| || || || || || || |||||||||| || | | ||| |||| |||||
Sbjct 419 TGATCAATAAAAGCACCTCTATCAGCAGCCATTTGAATTGTAGA-TTTAATGGATATTTC 477
Query 71001 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTT--GTATTCT-GAATGGA 71057
||||| ||||||||||| | | |||| | |||||| || | |||| | || ||
Sbjct 478 CCAAACAGTTTTATAAAGTTCTCTGATATGTGCTGGAATTCTTTCGATTTCTTGTATAGA 537
Query 71058 TCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 71117
|||| | || |||||| ||||| || || || | |||||| | ||| |||||
Sbjct 538 ACCACGTTTTGAAATAATTTCGTTTTTCATATCATCGTCCCATAAATCAAGCTCTGTTAA 597
Query 71118 AACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTA 71177
| | || | ||| | || || ||||| || || ||||| ||||||| ||| | ||
Sbjct 598 GTCCTTGAGCAAATGGTGGTTTACAACTTGGAACTCACCAGATAATACTCGACGGTTATA 657
Query 71178 AATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 71237
|||||| ||||| ||||| | ||| ||||| ||||||||||||||||||||||| ||
Sbjct 658 AATATTTGAAGTATATGGTTCGAATGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 717
Query 71238 AGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTT 71297
||| ||||| ||||| | ||||| |||||| | ||||| |||||||| ||
Sbjct 718 AGTTGGCATTGGTGCAATCAATAATGAATTTCTTACTCCATGAACCTTTATTTTATCCTT 777
Query 71298 TAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNAT 71357
||||| || ||||| ||| | ||| | ||| ||
Sbjct 778 TAGAGCTTGCCAATCCCACAAATCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGAT 837
Query 71358 GCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTC 71417
|| || ||| | ||| ||||||| || || | || |||||||| || |||||
Sbjct 838 TCCTTTGCTAACTGGGCTTCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTC 897
Query 71418 ACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTG 71477
|||||| || || | |||||||||||||| || || || || | || ||| || ||
Sbjct 898 ACAACTTGCTTCAAGAGCTCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTG 957
Query 71478 TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 71537
|| | || || | |||||| | ||||| || || || | || ||||| ||
Sbjct 958 AGCCTTTTCACTTTCGTAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTAC 1017
Query 71538 GCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATA 71597
|| || |||||||| ||||| | ||| || || |||||| || | ||||||||
Sbjct 1018 ACCGATCCCGATAGGCCTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATA 1077
Query 71598 ATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTT 71657
||||| |||||| ||||| || | ||||||| ||| | ||| || || || | |||
Sbjct 1078 ATTAACATCTATTATTTTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTT 1137
Query 71658 GAGAAAATCAAATCTCCCATC 71678
| |||||| || | | |||
Sbjct 1138 TGGGAAATCATATTTACGATC 1158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 669200941601160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |