Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq229830 141 9e-29
seq160753 118 1e-21
seq80618 111 2e-19
>seq229830
Length=7395
Score = 141 bits (156), Expect = 9e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||||| | ||| || |||||||| | ||||||||||||||| ||||| || || |
Sbjct 6013 CCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGAC 5954
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| |||||| | |||||| |||||| |||||| |||||| ||||| |||||
Sbjct 5953 AATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 5894
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| || || || | | ||| | ||||| | || || |||
Sbjct 5893 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACT 5834
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|| | || | || || || ||||| ||||| ||||| ||||||||| ||
Sbjct 5833 TCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCATACCT 5783
Score = 136 bits (150), Expect = 4e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | |||||| || || |||| || ||||||||||| |||||||||||||||
Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| |||| || | ||||| | |||||| ||||| |||||| ||||||||| || || ||
Sbjct 5725 AAAGTGCGTCCA-TCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 5667
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| ||||| |||||| ||| | | ||| | || || | ||||| ||
Sbjct 5666 GATTCCTTCCTTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 5607
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | || || || ||||| || || ||||| || ||||||
Sbjct 5606 CTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATA 5558
Score = 134 bits (148), Expect = 1e-26
Identities = 169/231 (73%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|||||||| | ||| | ||| || |||| |||||||| ||||| || ||||| |||||
Sbjct 6240 CCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 6181
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||||| | ||||||||| ||| |||| |||||||| ||||| |||||
Sbjct 6180 AAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGA 6122
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| ||| || || | | ||| | ||||| | || || |||
Sbjct 6121 ATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACT 6062
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|| | || | ||||| || ||||| || || ||||| ||||||||| ||
Sbjct 6061 TCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCATACCT 6011
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | |||||| || || || | |||||||||||||| ||||| || |||||
Sbjct 165 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTA 106
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| |||||||| || || || ||| | || ||||| || ||||| |||||
Sbjct 105 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGA 46
Query 143078 ATGCCTTCTTTGTC 143091
|||||||| |||||
Sbjct 45 ATGCCTTCCTTGTC 32
>seq160753
Length=592
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | ||| || |||| || || || ||||| ||||| |||||
Sbjct 365 CCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGAT 424
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| ||||| || | ||||| | |||||| ||||| |||||| |||||||||||| |||||
Sbjct 425 AATGTGCGTCCA-TCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGG 483
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| |||||||| || || || || | | ||| | ||||| | ||||| ||
Sbjct 484 GATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAAC 543
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||||| || | || ||||| ||||| ||||| ||||| || ||||||
Sbjct 544 TTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCATA 592
>seq80618
Length=357
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| || || |||| |||||||| ||||| |||||||| ||| |
Sbjct 350 CCACCACGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 291
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| |||| || | ||||| | ||| || || || |||||| |||||| ||||| || ||
Sbjct 290 AAGGTGCGTCCA-TCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGG 232
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||||||||| || || || | | ||| | ||||| | ||||| ||
Sbjct 231 GATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAAC 172
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | || | ||||| || ||||| || || ||||| || |||||
Sbjct 171 TTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505550136075120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |