Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7579 178 2e-39 seq51935 134 2e-26 >seq7579 Length=34747 Score = 178 bits (196), Expect = 2e-39 Identities = 389/579 (67%), Gaps = 3/579 (1%) Strand=Plus/Plus Query 70046 GGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCAC 70105 || || || || || |||| || ||| |||||||||| || |||||||| ||| | || Sbjct 14009 GGTTTTACTGATAGGGAAGAAGGGGATTTGGGGCCAGTCTATGGATTCCAATGGCGTCAT 14068 Query 70106 TCGGGCACCAAGTATGTAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATT 70164 | || | | ||| | || | ||| |||||||| || || ||||||||||| Sbjct 14069 TTTGGGGCAGAATATAAAACTTGTCATGAC-GACTATTCAAACCAAGGAGTTGATCAATT 14127 Query 70165 GCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTC 70224 | | ||||| | | |||||| ||||| || || || |||||| |||| | Sbjct 14128 GAATGATGTCATTCAAAGAATCAAGAATAATCCTACGGACAGAAGGATCTGTATGTCAGC 14187 Query 70225 ATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTT 70284 ||||| || | ||| | | |||||||| ||||||| ||||| ||||| ||||| || Sbjct 14188 TTGGAACCCAGTGGATCTTCCAAAAATGGCATTACCACCTTGTCATTGTTTTGCTCAATT 14247 Query 70285 TTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 ||| | |||| | || ||||| || ||||| || ||| ||| || | || || Sbjct 14248 TTATGTTCAAGATGATGAGTTATCATGTTTGATGTACCAAAGGTCTGCTGATGTTGGGCT 14307 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 ||| || || || || |||||||| || || | ||||| | ||||||||||| | Sbjct 14308 CGGAGT-CCTTTCAATATTGCAAGTTACGCTTTATTGACTTATATGATTGCTCATCTCTG 14366 Query 70405 CGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCA 70464 || || |||| || || || |||| |||| ||| |||| || ||| ||||| Sbjct 14367 TGGTCTCAAAGTTGGAGACTTTGTTCACAGTTTTGGGGACACTCATGTCTATAAGAATCA 14426 Query 70465 CATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTT 70524 | || || || || | || || || | | || |||||||| || |||||| | Sbjct 14427 TGTTGATCCTTTGAAAGAACAGCTTAAAAGAGTTCCAAGACCTTTCCCAAAGCTGATCAT 14486 Query 70525 TGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTA 70584 | |||||||| || || || || || || | |||||||| | || ||||||| Sbjct 14487 TAACCGTAAAGTCGAGAAAATCGAGGACTTCAAATTTGAAGATTTCACTATTGAAGGTTA 14546 Query 70585 CGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTA 70623 ||||||||| || | ||| |||| |||| ||||| Sbjct 14547 CGATCCATATCCAACTATTAAAATGGAAATGGCCGTTTA 14585 >seq51935 Length=6360 Score = 134 bits (148), Expect = 2e-26 Identities = 303/455 (67%), Gaps = 13/455 (3%) Strand=Plus/Minus Query 127218 AATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCG 127277 |||||| || ||||| || | || | | | || ||||| |||| | ||||||| Sbjct 3587 AATGTGGGCCATATCAGCAAAGAGATAAGCGTCGTTGGCATCAGCAACTTGACGGAATCT 3528 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 | | ||||||||| |||| ||||| | || || ||||| | || ||||| Sbjct 3527 TTTGTAGTCCAAGTAACGAGAGTAGCATGAAATTCCAGCAATGATGACTTGTGGCTTGAA 3468 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 || || ||| | | | | | | ||||||| ||| ||||| || | || || Sbjct 3467 GAGCTTAGCATTGGCTTCCAATGCATCGTAGTCGATGAGACCAGTGGTTGGGTTTACTTT 3408 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTGCG-----GAA 127445 ||| |||||||||||||| |||| ||| ||||| || | |||| | ||| Sbjct 3407 GTAGGGCATGCTTTCGAAGAAGATTGAGGTAGCTGAGATTTTTTTGGTTGGGGTGAAGAA 3348 Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505 || || |||| ||| || || || |||| ||| | |||||||| | ||| || |||| Sbjct 3347 ACCATGGGTCAAGTGACCACCATCAGGCAAATCCAAACCCATGATACGACCATG-GGTTG 3289 Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565 | || |||||||| || |||||||| || || || ||||| ||||| ||| || Sbjct 3288 GATGAGACCAGTGTAAACAGCAAAGTTAGCTGGGGATCCTGAGTAGGGTTGGACATTGAC 3229 Query 127566 TCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTC 127625 |||||||| |||||||||| | ||| ||| |||| || || | | ||| Sbjct 3228 ACCCCATTCTTCAGGGTTCAAATTGTAGGCTTCAAGAGCACGCTTTTGAGCCAAGATTTC 3169 Query 127626 GATGCGATCGATAAACTCGTTACCACCATAGTATC 127660 ||| ||||||| || | || || |||||||||| Sbjct 3168 GATTTGATCGATGAATTGATTTCCCCCATAGTATC 3134 Score = 107 bits (118), Expect = 3e-18 Identities = 277/420 (66%), Gaps = 13/420 (3%) Strand=Plus/Minus Query 126664 GCCAATTTCAGAGCACGATCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGAC- 126722 |||||||||| |||| ||||||||| || | | |||||||| | ||| || Sbjct 4370 GCCAATTTCAAAGCAGCGTCAATGTAGCTAACAACTTGGTCAATGTC----TTTTTCACC 4315 Query 126723 --ACCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTC 126780 ||| | ||| |||| ||||| || || | |||||| || ||| | ||||| | Sbjct 4314 AAACCTCTGGTGGTCAAAGCAGGTGTTCCTAATCTGATTCCAGATGGGTTAAGAGCAGAC 4255 Query 126781 TTGTCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACA---GTTCGAGGATGCGC 126837 |||||||| |||||||| |||||||||||||| | || | | ||| | ||| Sbjct 4254 TTGTCTCCAGGTACTGTATTTTTGTTGCAAGCAA---TGGAAACTTCTTCCAAAATGTAT 4198 Query 126838 TCTGCCGGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCG 126897 || || | ||||| | | ||| |||| | |||||| || || | || || ||||| Sbjct 4197 TCAGCACGAGCTCCAGTTACTCCAGCACTTCTCAAATCAACAAGGACCAAGTGAACATCA 4138 Query 126898 GTACCGCCAGTGGTGACGGTGTAGCCTCGTGAAACGAGTCCCTCTGCCAACAACTGTGCA 126957 || || |||||| | | |||| || ||| | || || || | || || Sbjct 4137 GTTCCTCCAGTGACAATGTTGTATCCCTTTGAGATAAGACCATCACTGAGACGCTTAGCG 4078 Query 126958 TTTCGCACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCG 127017 || | || ||| || ||||||| | || || |||| |||| || ||||| || Sbjct 4077 TTAAGGACGACTTGTTTTTGGTATTCGACGAATTCAGGAGTCTTGGCTTGTTGCATAGCA 4018 Query 127018 GTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGCT 127077 ||||| | ||||| | ||||||||| || || ||||| || || || || || ||| Sbjct 4017 ACAGCGATACCGGCAATAGCGTGATTGTGTGGACCTCCTTGTAGTCCTGGGAATACAGCT 3958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738919011767160