Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq7579 178 2e-39
seq51935 134 2e-26
>seq7579
Length=34747
Score = 178 bits (196), Expect = 2e-39
Identities = 389/579 (67%), Gaps = 3/579 (1%)
Strand=Plus/Plus
Query 70046 GGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCAC 70105
|| || || || || |||| || ||| |||||||||| || |||||||| ||| | ||
Sbjct 14009 GGTTTTACTGATAGGGAAGAAGGGGATTTGGGGCCAGTCTATGGATTCCAATGGCGTCAT 14068
Query 70106 TCGGGCACCAAGTATGTAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATT 70164
| || | | ||| | || | ||| |||||||| || || |||||||||||
Sbjct 14069 TTTGGGGCAGAATATAAAACTTGTCATGAC-GACTATTCAAACCAAGGAGTTGATCAATT 14127
Query 70165 GCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTC 70224
| | ||||| | | |||||| ||||| || || || |||||| |||| |
Sbjct 14128 GAATGATGTCATTCAAAGAATCAAGAATAATCCTACGGACAGAAGGATCTGTATGTCAGC 14187
Query 70225 ATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTT 70284
||||| || | ||| | | |||||||| ||||||| ||||| ||||| ||||| ||
Sbjct 14188 TTGGAACCCAGTGGATCTTCCAAAAATGGCATTACCACCTTGTCATTGTTTTGCTCAATT 14247
Query 70285 TTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344
||| | |||| | || ||||| || ||||| || ||| ||| || | || ||
Sbjct 14248 TTATGTTCAAGATGATGAGTTATCATGTTTGATGTACCAAAGGTCTGCTGATGTTGGGCT 14307
Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404
||| || || || || |||||||| || || | ||||| | ||||||||||| |
Sbjct 14308 CGGAGT-CCTTTCAATATTGCAAGTTACGCTTTATTGACTTATATGATTGCTCATCTCTG 14366
Query 70405 CGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCA 70464
|| || |||| || || || |||| |||| ||| |||| || ||| |||||
Sbjct 14367 TGGTCTCAAAGTTGGAGACTTTGTTCACAGTTTTGGGGACACTCATGTCTATAAGAATCA 14426
Query 70465 CATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTT 70524
| || || || || | || || || | | || |||||||| || |||||| |
Sbjct 14427 TGTTGATCCTTTGAAAGAACAGCTTAAAAGAGTTCCAAGACCTTTCCCAAAGCTGATCAT 14486
Query 70525 TGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTA 70584
| |||||||| || || || || || || | |||||||| | || |||||||
Sbjct 14487 TAACCGTAAAGTCGAGAAAATCGAGGACTTCAAATTTGAAGATTTCACTATTGAAGGTTA 14546
Query 70585 CGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTA 70623
||||||||| || | ||| |||| |||| |||||
Sbjct 14547 CGATCCATATCCAACTATTAAAATGGAAATGGCCGTTTA 14585
>seq51935
Length=6360
Score = 134 bits (148), Expect = 2e-26
Identities = 303/455 (67%), Gaps = 13/455 (3%)
Strand=Plus/Minus
Query 127218 AATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCG 127277
|||||| || ||||| || | || | | | || ||||| |||| | |||||||
Sbjct 3587 AATGTGGGCCATATCAGCAAAGAGATAAGCGTCGTTGGCATCAGCAACTTGACGGAATCT 3528
Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337
| | ||||||||| |||| ||||| | || || ||||| | || |||||
Sbjct 3527 TTTGTAGTCCAAGTAACGAGAGTAGCATGAAATTCCAGCAATGATGACTTGTGGCTTGAA 3468
Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397
|| || ||| | | | | | | ||||||| ||| ||||| || | || ||
Sbjct 3467 GAGCTTAGCATTGGCTTCCAATGCATCGTAGTCGATGAGACCAGTGGTTGGGTTTACTTT 3408
Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTGCG-----GAA 127445
||| |||||||||||||| |||| ||| ||||| || | |||| | |||
Sbjct 3407 GTAGGGCATGCTTTCGAAGAAGATTGAGGTAGCTGAGATTTTTTTGGTTGGGGTGAAGAA 3348
Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505
|| || |||| ||| || || || |||| ||| | |||||||| | ||| || ||||
Sbjct 3347 ACCATGGGTCAAGTGACCACCATCAGGCAAATCCAAACCCATGATACGACCATG-GGTTG 3289
Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565
| || |||||||| || |||||||| || || || ||||| ||||| ||| ||
Sbjct 3288 GATGAGACCAGTGTAAACAGCAAAGTTAGCTGGGGATCCTGAGTAGGGTTGGACATTGAC 3229
Query 127566 TCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTC 127625
|||||||| |||||||||| | ||| ||| |||| || || | | |||
Sbjct 3228 ACCCCATTCTTCAGGGTTCAAATTGTAGGCTTCAAGAGCACGCTTTTGAGCCAAGATTTC 3169
Query 127626 GATGCGATCGATAAACTCGTTACCACCATAGTATC 127660
||| ||||||| || | || || ||||||||||
Sbjct 3168 GATTTGATCGATGAATTGATTTCCCCCATAGTATC 3134
Score = 107 bits (118), Expect = 3e-18
Identities = 277/420 (66%), Gaps = 13/420 (3%)
Strand=Plus/Minus
Query 126664 GCCAATTTCAGAGCACGATCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGAC- 126722
|||||||||| |||| ||||||||| || | | |||||||| | ||| ||
Sbjct 4370 GCCAATTTCAAAGCAGCGTCAATGTAGCTAACAACTTGGTCAATGTC----TTTTTCACC 4315
Query 126723 --ACCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTC 126780
||| | ||| |||| ||||| || || | |||||| || ||| | ||||| |
Sbjct 4314 AAACCTCTGGTGGTCAAAGCAGGTGTTCCTAATCTGATTCCAGATGGGTTAAGAGCAGAC 4255
Query 126781 TTGTCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACA---GTTCGAGGATGCGC 126837
|||||||| |||||||| |||||||||||||| | || | | ||| | |||
Sbjct 4254 TTGTCTCCAGGTACTGTATTTTTGTTGCAAGCAA---TGGAAACTTCTTCCAAAATGTAT 4198
Query 126838 TCTGCCGGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCG 126897
|| || | ||||| | | ||| |||| | |||||| || || | || || |||||
Sbjct 4197 TCAGCACGAGCTCCAGTTACTCCAGCACTTCTCAAATCAACAAGGACCAAGTGAACATCA 4138
Query 126898 GTACCGCCAGTGGTGACGGTGTAGCCTCGTGAAACGAGTCCCTCTGCCAACAACTGTGCA 126957
|| || |||||| | | |||| || ||| | || || || | || ||
Sbjct 4137 GTTCCTCCAGTGACAATGTTGTATCCCTTTGAGATAAGACCATCACTGAGACGCTTAGCG 4078
Query 126958 TTTCGCACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCG 127017
|| | || ||| || ||||||| | || || |||| |||| || ||||| ||
Sbjct 4077 TTAAGGACGACTTGTTTTTGGTATTCGACGAATTCAGGAGTCTTGGCTTGTTGCATAGCA 4018
Query 127018 GTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGCT 127077
||||| | ||||| | ||||||||| || || ||||| || || || || || |||
Sbjct 4017 ACAGCGATACCGGCAATAGCGTGATTGTGTGGACCTCCTTGTAGTCCTGGGAATACAGCT 3958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 738919011767160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |