Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_004305.1 Length=42259 Score E Sequences producing significant alignments: (Bits) Value seq139140 279 1e-70 seq125644 123 7e-24 >seq139140 Length=514 Score = 279 bits (308), Expect = 1e-70 Identities = 258/327 (79%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 37939 ATAGCCTTCCTTGAATGGCACACGCCATTCAAACATGAAATCGATAACTAGGTCGAGGAG 37998 |||||||| ||||| || |||||||| ||||||||| ||||||||||||||||| | Sbjct 3 ATAGCCTTGTTTGAACGGTACACGCCACGTAAACATGAAGTCGATAACTAGGTCGAGTAA 62 Query 37999 CATGTTAGCATCACTCACAGACGATTTTGTGCCATCTGACAGACTGATCTGTTTACCTGC 38058 || ||||||||| ||||| ||||||| ||| |||||||| || || ||||| || Sbjct 63 CACGTTAGCATCGCTCACGGACGATTCTGTCGTGTCTGACAGGCTAATTTGTTTGCCAAA 122 Query 38059 CGTATACTCCCGATACTCCATGTAAAACAAGTCCTTCAAAAAGTCCGTTGCCATACCAGA 38118 ||| || ||| ||| | || || ||||| || ||||||||||| || | ||| || || Sbjct 123 CGTGTATTCCTCATATTGCAGATAGAACAACTCTTTCAAAAAGTCTGTAGGCATGCCTGA 182 Query 38119 CCATGTATAAATGTCCGTCAGTAATGCAAAGAACAACCGCCGCTGCTGAGGCCTAGCTTT 38178 ||| ||||||||||| |||| | |||||||| | ||||| || || |||||||| || Sbjct 183 CCAGGTATAAATGTCACTCAGCAGGGCAAAGAATAGTCGCCGTTGTTGTGGCCTAGCCTT 242 Query 38179 GCGTCTGTCAGCTAGTTTCCAATCCATATAAAACTGGTCACGGGACCCGCTGACGGTCTC 38238 |||| ||||||||| || |||||| | |||| |||||||| || ||||| |||||||| Sbjct 243 GCGTGTGTCAGCTAATTCCCAATCTAGGTAAAGTTGGTCACGTGAACCGCTAACGGTCTC 302 Query 38239 TATATGATCCAAATTGGGCTTTTCGTC 38265 ||||| |||||||| ||||||| ||| Sbjct 303 GATATGGTCCAAATTTGGCTTTTGGTC 329 >seq125644 Length=474 Score = 123 bits (136), Expect = 7e-24 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 37844 ACATGATGGATATCAGCACGATTACCACAGATCATGCAAACTCGATGGCGACAACACTGA 37903 |||||||| || || || || | |||||| | ||| |||||||| || ||||||||| Sbjct 193 ACATGATGAATTTCTGCTCGTTCACCACATACACAGCACACTCGATGCCGGCAACACTGA 252 Query 37904 AACAAGTAATACTCTTGTTCATGCGGCAACAGCTTATAGCCTTCCTTGAATGGCACACGC 37963 ||| ||||||| || || | || | | | | |||||||| ||||| || |||||| Sbjct 253 TACATGTAATACCTTTCCTCTCGTGGAAGCTGTTCATAGCCTTGTTTGAACGGTACACGC 312 Query 37964 CATTCAAACATGAAATCGATAACTAGGTCGAGGAGCATGTTAGCAT 38009 || ||||||||| ||||||||||||||||| | || |||||||| Sbjct 313 CACGTAAACATGAAGTCGATAACTAGGTCGAGTAACACGTTAGCAT 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134736518281682