Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq229830 167 2e-36 seq80618 134 1e-26 seq160753 95.1 9e-15 seq193759 86.0 5e-12 >seq229830 Length=7395 Score = 167 bits (184), Expect = 2e-36 Identities = 170/219 (78%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || |||||||| || |||||||| |||||||||||||| | | | | | ||| Sbjct 5770 AATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCATCT 5711 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||||||||||||| | ||||||||||| ||||| || |||||||| ||||| Sbjct 5710 TCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCC 5651 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| || ||| |||| || |||||| ||| || || |||||||| || Sbjct 5650 TGAATTTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTGT 5592 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 |||||| |||| ||| || || ||||| |||||||| || Sbjct 5591 TTTACCAGTCAAAGTCTTGACGAAAATCTGCATATTGGA 5553 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | | ||| |||||||| || || || |||||||| ||||| || || | Sbjct 6013 CCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTC--TG 5956 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || ||||||| |||||||||||||| | |||||||||||||| || | Sbjct 5955 ACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAG 5896 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| || ||| ||| || |||| || || || | || | Sbjct 5895 GAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAA 5836 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || |||||||| || |||| ||||| || |||||||||||| Sbjct 5835 CTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCATA 5786 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| || || || ||||| || ||||| ||||||| | | | | ||||| Sbjct 6223 AACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAGTGCGACCATCTTC 6164 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| || || | || | ||||||| | || ||||| ||||||||||| Sbjct 6163 CAATTGTTTACCGGCAAAGATGAGACGTTGT-GATCTGGAGGAATACCTTCTTTGTCTTG 6105 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| || |||| || || || || || ||||||||||| || || Sbjct 6104 AATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCTT 6045 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || || || ||||||||| Sbjct 6044 TCCAGTCAAAGTCTTGACGAAGATTTGCATA 6014 >seq80618 Length=357 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || |||||||| || || ||||| |||||||| ||| | | | | ||| Sbjct 335 AACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCT 276 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || ||| | |||||||||||||| || ||| |||||||||||||| Sbjct 275 TCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCT 216 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| ||||| ||| | ||| || || ||||||||||| Sbjct 215 TGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTC 156 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||| ||| || || ||||| ||||| Sbjct 155 TTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124 >seq160753 Length=592 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCT 15211 ||| || ||||| || || || ||||| ||||| ||||| | | ||| || | ||| Sbjct 382 AACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATC--TGATAATGTGCGTCCATCT 439 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||||||||||||| | ||||||||||| || || || ||||||||||| || Sbjct 440 TCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTTATCC 499 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || ||| || |||| || || || ||| || || | ||| || ||| Sbjct 500 TGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGATAGTT 559 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || || || |||||| Sbjct 560 TTGCCAGTCAAGGTTTTGACGAAGATCTGCATA 592 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || ||||||||||| || || ||||| ||||| ||||| | | ||| || | | Sbjct 152 AATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATC--TGACAATGTGCGTCCAT 209 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| || || || || ||| | |||||||||||||| || || || ||||| || | Sbjct 210 CTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTAT 269 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | ||| || ||| || | || ||||| || || || || | ||| || | Sbjct 270 CTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATAG 329 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| |||||| || ||||| |||||| Sbjct 330 TTTTTCCAGTCAAAGTTTTGACGAAAATCTGCATA 364 >seq193759 Length=801 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/221 (70%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| || ||||||| | ||| | | | | || ||||| |||||||| | ||| Sbjct 363 TTTTGGATATTGTAATTGGAAAGAGTACGGCCATATTTAAATTGCTTGCCAGCAAAGATC 304 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 | | |||||| || |||||||| |||||||| ||| ||| | ||| | || Sbjct 303 CATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTGGCTATAACATTCTCG 244 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355 || ||| | | |||| | || |||||||||||||||| | || |||||||||||| Sbjct 243 ATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTTACAGATAAGGGTTTTTACAAAA 185 Query 15356 ATTTGCATATTTGAAAATAAAATTTT--AATACTTATAAGA 15394 ||||| || | || |||| |||| ||||||| |||| Sbjct 184 ATTTGAAT-TCTG----TAAACTTTTGAAATACTTTGAAGA 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361159371394581