Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq229830 167 2e-36
seq80618 134 1e-26
seq160753 95.1 9e-15
seq193759 86.0 5e-12
>seq229830
Length=7395
Score = 167 bits (184), Expect = 2e-36
Identities = 170/219 (78%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || || |||||||| || |||||||| |||||||||||||| | | | | | |||
Sbjct 5770 AATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCATCT 5711
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| ||||||||||||||| | ||||||||||| ||||| || |||||||| |||||
Sbjct 5710 TCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCC 5651
Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
|||||| ||| || ||| |||| || |||||| ||| || || |||||||| ||
Sbjct 5650 TGAATTTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTGT 5592
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369
|||||| |||| ||| || || ||||| |||||||| ||
Sbjct 5591 TTTACCAGTCAAAGTCTTGACGAAAATCTGCATATTGGA 5553
Score = 131 bits (144), Expect = 1e-25
Identities = 168/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| ||||| | | ||| |||||||| || || || |||||||| ||||| || || |
Sbjct 6013 CCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTC--TG 5956
Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| ||| || ||||||| |||||||||||||| | |||||||||||||| || |
Sbjct 5955 ACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAG 5896
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
|||| ||||||||||| || ||| ||| || |||| || || || | || |
Sbjct 5895 GAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAA 5836
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| || || || |||||||| || |||| ||||| || ||||||||||||
Sbjct 5835 CTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCATA 5786
Score = 98.7 bits (108), Expect = 7e-16
Identities = 149/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| || ||||| || || || ||||| || ||||| ||||||| | | | | |||||
Sbjct 6223 AACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAGTGCGACCATCTTC 6164
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|||||||| || || | || | ||||||| | || ||||| |||||||||||
Sbjct 6163 CAATTGTTTACCGGCAAAGATGAGACGTTGT-GATCTGGAGGAATACCTTCTTTGTCTTG 6105
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| || ||| || |||| || || || || || ||||||||||| || ||
Sbjct 6104 AATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCTT 6045
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| ||| || || || |||||||||
Sbjct 6044 TCCAGTCAAAGTCTTGACGAAGATTTGCATA 6014
>seq80618
Length=357
Score = 134 bits (148), Expect = 1e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || || |||||||| || || ||||| |||||||| ||| | | | | |||
Sbjct 335 AACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCT 276
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| ||||| || || ||| | |||||||||||||| || ||| ||||||||||||||
Sbjct 275 TCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCT 216
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
|| ||| ||| ||| |||| ||||| ||| | ||| || || |||||||||||
Sbjct 215 TGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTC 156
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| |||| ||| || || ||||| |||||
Sbjct 155 TTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124
>seq160753
Length=592
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCT 15211
||| || ||||| || || || ||||| ||||| ||||| | | ||| || | |||
Sbjct 382 AACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATC--TGATAATGTGCGTCCATCT 439
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| ||||||||||||||| | ||||||||||| || || || ||||||||||| ||
Sbjct 440 TCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTTATCC 499
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
|| || ||| || |||| || || || ||| || || | ||| || |||
Sbjct 500 TGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGATAGTT 559
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||| ||||| || || || ||||||
Sbjct 560 TTGCCAGTCAAGGTTTTGACGAAGATCTGCATA 592
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209
|| || ||||||||||| || || ||||| ||||| ||||| | | ||| || | |
Sbjct 152 AATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATC--TGACAATGTGCGTCCAT 209
Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269
|||| || || || || ||| | |||||||||||||| || || || ||||| || |
Sbjct 210 CTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTAT 269
Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329
| ||| || ||| || | || ||||| || || || || | ||| || |
Sbjct 270 CTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATAG 329
Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||| || |||| |||||| || ||||| ||||||
Sbjct 330 TTTTTCCAGTCAAAGTTTTGACGAAAATCTGCATA 364
>seq193759
Length=801
Score = 86.0 bits (94), Expect = 5e-12
Identities = 154/221 (70%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235
||||| || ||||||| | ||| | | | | || ||||| |||||||| | |||
Sbjct 363 TTTTGGATATTGTAATTGGAAAGAGTACGGCCATATTTAAATTGCTTGCCAGCAAAGATC 304
Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295
| | |||||| || |||||||| |||||||| ||| ||| | ||| | ||
Sbjct 303 CATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTGGCTATAACATTCTCG 244
Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355
|| ||| | | |||| | || |||||||||||||||| | || ||||||||||||
Sbjct 243 ATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTTACAGATAAGGGTTTTTACAAAA 185
Query 15356 ATTTGCATATTTGAAAATAAAATTTT--AATACTTATAAGA 15394
||||| || | || |||| |||| ||||||| ||||
Sbjct 184 ATTTGAAT-TCTG----TAAACTTTTGAAATACTTTGAAGA 149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361159371394581
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |