Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq222403 93.3 2e-14 >seq222403 Length=4011 Score = 93.3 bits (102), Expect = 2e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 29570 CCAGGGCTGGAAGCTGGGCGGGGCCATAAAAACCACCGAGCGCAAACTGGCT-GAGGGAG 29628 ||||||||||||||| ||||| || |||||| | || || ||||| ||| || | | Sbjct 3668 CCAGGGCTGGAAGCTCACAGGGGCAATCAAAACCGCAGAACGGAAACTTGCTGGACGTAC 3609 Query 29629 TACTGGTGCATGGTGGTCAGCCACTGATGGCCTGGTGCGTTGGCAATGCCCGGGTGGAGC 29688 | ||| | ||| |||| ||||| | ||||| ||| || || |||||||| ||||| Sbjct 3608 T-CTGATCCATTGTGGGCAGCCCATCATGGCATGGGCAGTCGGAAATGCCCGTGTGGAAG 3550 Query 29689 CTAAAGGTAACGCCATTCTTATTACCAAACAGGCCAGCGGACGGGGGAAAATTGACCCGC 29748 | ||||| || ||| || | || || |||||| || || || || ||||| | Sbjct 3549 CGAAAGGAAATGCCGTTGTCATAGAAAAGCAGGCCGCAGGTTGGTCAAAGATAGACCCTC 3490 Query 29749 TGATGGCGCTCTTCAATGCGGTATCCCTGATGTCCCTGAATCC 29791 | ||| |||| ||| | | ||| || ||||| || ||||| Sbjct 3489 TTATGTCGCTTTTCGACACAGTAGTGCTCATGTCTCTCAATCC 3447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184746133828264