Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq229830 111 1e-19 seq80618 102 5e-17 seq160753 86.0 4e-12 >seq229830 Length=7395 Score = 111 bits (122), Expect = 1e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || || || ||||| | ||| || |||||||| || || || || || Sbjct 6014 ACCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGA 5955 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| || || ||| |||||||| || ||| ||| || |||||||| || || | || Sbjct 5954 CAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGG 5895 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || ||| |||| | || ||| ||| ||||| || | Sbjct 5894 AATACCTTCTTTGTCTTGGATCTTGGCCT---TAACGTTTTCAATTGTGTCAGAAGGCTC 5838 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| || || |||||||| || | ||||| |||||||||||||| Sbjct 5837 AACTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 Score = 109 bits (120), Expect = 3e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || |||||||| || |||||||| |||| || || Sbjct 5773 CGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCA 5714 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || ||| || || |||||||||||||| | ||| || ||||| || Sbjct 5713 TCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTG 5654 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || ||| |||| ||| |||| || || Sbjct 5653 TCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATT 5594 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || || | ||| || |||||||| ||||| || Sbjct 5593 GTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556 >seq80618 Length=357 Score = 102 bits (112), Expect = 5e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || ||||| || ||||| || ||||| || || Sbjct 338 CGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCA 279 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || |||||||||||||| || || |||||||| || || | || || |||||||| Sbjct 278 TCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTG 219 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| ||| |||||| |||| ||| |||| || Sbjct 218 TCTTGGATCTTGGCC---TTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTA 162 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || | ||| || |||||||| ||||| Sbjct 161 ATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124 >seq160753 Length=592 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| ||||| || || ||||| || || || || || ||| Sbjct 383 ACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGATAATGTGCGTCCATCTTCC 442 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 ||||| || ||| || || ||||||||||| || | || || |||||||| || | Sbjct 443 AATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTTATCCTGG 502 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| ||||| |||| ||| || || || || ||| Sbjct 503 ATCTTAGCC---TTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGATAGTT 559 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | ||||| ||||| || ||||| Sbjct 560 TTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317879982148818