Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq229830 140 7e-28 seq80618 129 1e-24 seq160753 116 8e-21 seq193759 104 5e-17 seq43178 84.2 5e-11 >seq229830 Length=7395 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | ||||| ||| | |||||||||||| ||||| |||||||| Sbjct 6016 ATACCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCT 5957 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| | |||||| |||||||| || | | |||||||| ||| Sbjct 5956 GACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGA 5897 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| || || || ||||| | || || ||| || Sbjct 5896 GGAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCA 5837 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || ||||| | ||||| || || || ||||| Sbjct 5836 ACTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || | || | |||||||| || || ||||| ||||| Sbjct 6243 ATACCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 6184 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||| | ||| ||||| | |||||| || ||||| || || | ||| |||| ||| Sbjct 6183 CTTAAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTGT-GATCTGGA 6125 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || |||||||| || || || ||||| | || || || || Sbjct 6124 GGAATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCA 6065 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||||||||||| ||||| | || || || || || ||||| Sbjct 6064 ACTTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015 Score = 116 bits (128), Expect = 8e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| |||||||| ||||| | || ||||| || || ||||| Sbjct 135 GTAGATTCTTTTTGAATGTTATAGTCGCTAAGAGTGCGGCCATCTTCGAGCTGCTTTCCG 76 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||||||| ||||| || ||||| || ||||| ||||| ||||| Sbjct 75 GCAAAAATGAGACGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTG 16 Query 104483 ACATTTTCTACGGT 104496 || ||||| | ||| Sbjct 15 ACGTTTTCAATGGT 2 >seq80618 Length=357 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || ||||| || | || | || ||||| | ||| ||||| Sbjct 320 GTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCAATTGCTTTCCG 261 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||||| || || ||||||||||| || || ||||| || || Sbjct 260 GCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTG 201 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| ||| |||||| || || | ||||| ||||||||||| | || Sbjct 200 ACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTCTTACCAGTCAAAGTC 141 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || ||||||||| || Sbjct 140 TTGACGAAAATCTGCATTCTG 120 >seq160753 Length=592 Score = 116 bits (128), Expect = 8e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || ||||| || |||| || | || ||||| | |||||| ||| Sbjct 395 GTTGACTCCTTTTGGATGTTATAATCTGATAATGTGCGTCCATCTTCCAATTGTTTGCCA 454 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || ||||| ||||| ||||||||||||||||| ||||| || || Sbjct 455 GCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTTATCCTGGATCTTAGCCTTG 514 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || || ||||| || || || || ||||| || ||||| | ||| Sbjct 515 ACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGATAGTTTTGCCAGTCAAGGTT 574 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 575 TTGACGAAGATCTGCAT 591 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 |||||||| ||||| || ||||| |||||||||||||| || || || || || | ||| Sbjct 14 TGTTGATCTGGAGGGATACCTTCCTTATCCTGAATCTTAGCCTTAACGTTCTCGATGGTG 73 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || ||||| || |||| || || ||||||||||| | ||||| || || || ||| Sbjct 74 TCTGATGGTTCAACTTCTAAAGTGATGGTCTTACCAGTCAAGGTTTTGACGAAGATTTGC 133 Query 104558 AT 104559 || Sbjct 134 AT 135 >seq193759 Length=801 Score = 104 bits (114), Expect = 5e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||| || ||||| || | || ||||| | || | || | ||| || |||||||| Sbjct 365 TCTTT-TGGATATTGTAATTGGAAAGAGTACGGCCATATTTAAATTGCTTGCCAGCAAAG 307 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || |||||||| ||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 306 ATCCATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTGGCTATAACATTC 247 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| | ||||||| | || | ||||| || |||| |||| ||||||||| Sbjct 246 TCGATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTTACAGATAAGGGTTTTTACA 188 Query 104549 AATATCTGCATTTTGT 104564 || || || ||| ||| Sbjct 187 AAAATTTGAATTCTGT 172 >seq43178 Length=4857 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652 ||||| || || || || ||| || | | || ||||||||| ||||||| ||||| Sbjct 112 TGGAACTCAGCTCAAATTCAATTGATTAATGAGGGTAAAATGCATGGTTTCTTGAGAATG 53 Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAG 238705 |||||||| || ||||| |||||||||||| |||||| | |||||| |||| Sbjct 52 TATTGGGCAAAGAAGATTCTTGAATGGACTTCTTCTCCAGAAGAAGCT-TTAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147990015704028