Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq229830 140 7e-28
seq80618 129 1e-24
seq160753 116 8e-21
seq193759 104 5e-17
seq43178 84.2 5e-11
>seq229830
Length=7395
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | | ||||| ||| | |||||||||||| ||||| ||||||||
Sbjct 6016 ATACCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCT 5957
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | || | |||||||| | |||||| |||||||| || | | |||||||| |||
Sbjct 5956 GACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGA 5897
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || || ||||| || || || ||||| | || || ||| ||
Sbjct 5896 GGAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCA 5837
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | ||| || || || ||||| | ||||| || || || |||||
Sbjct 5836 ACTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787
Score = 118 bits (130), Expect = 2e-21
Identities = 165/230 (72%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | ||| || | || | |||||||| || || ||||| |||||
Sbjct 6243 ATACCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 6184
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||| | ||| ||||| | |||||| || ||||| || || | ||| |||| |||
Sbjct 6183 CTTAAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTGT-GATCTGGA 6125
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || |||||||| || || || ||||| | || || || ||
Sbjct 6124 GGAATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCA 6065
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| ||||||||||| ||||| | || || || || || |||||
Sbjct 6064 ACTTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015
Score = 116 bits (128), Expect = 8e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||||||||| ||||| |||||||| ||||| | || ||||| || || |||||
Sbjct 135 GTAGATTCTTTTTGAATGTTATAGTCGCTAAGAGTGCGGCCATCTTCGAGCTGCTTTCCG 76
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| || | ||||||||| ||||| || ||||| || ||||| ||||| |||||
Sbjct 75 GCAAAAATGAGACGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTG 16
Query 104483 ACATTTTCTACGGT 104496
|| ||||| | |||
Sbjct 15 ACGTTTTCAATGGT 2
>seq80618
Length=357
Score = 129 bits (142), Expect = 1e-24
Identities = 149/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||| || || || || ||||| || | || | || ||||| | ||| |||||
Sbjct 320 GTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCAATTGCTTTCCG 261
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | |||||||| || || ||||||||||| || || ||||| || ||
Sbjct 260 GCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTG 201
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||| ||| |||||| || || | ||||| ||||||||||| | ||
Sbjct 200 ACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTCTTACCAGTCAAAGTC 141
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || ||||||||| ||
Sbjct 140 TTGACGAAAATCTGCATTCTG 120
>seq160753
Length=592
Score = 116 bits (128), Expect = 8e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || || ||||| || |||| || | || ||||| | |||||| |||
Sbjct 395 GTTGACTCCTTTTGGATGTTATAATCTGATAATGTGCGTCCATCTTCCAATTGTTTGCCA 454
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | || ||||| ||||| ||||||||||||||||| ||||| || ||
Sbjct 455 GCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTTATCCTGGATCTTAGCCTTG 514
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| ||||| | || || ||||| || || || || ||||| || ||||| | |||
Sbjct 515 ACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGATAGTTTTGCCAGTCAAGGTT 574
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 575 TTGACGAAGATCTGCAT 591
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|||||||| ||||| || ||||| |||||||||||||| || || || || || | |||
Sbjct 14 TGTTGATCTGGAGGGATACCTTCCTTATCCTGAATCTTAGCCTTAACGTTCTCGATGGTG 73
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557
|| ||||| || |||| || || ||||||||||| | ||||| || || || |||
Sbjct 74 TCTGATGGTTCAACTTCTAAAGTGATGGTCTTACCAGTCAAGGTTTTGACGAAGATTTGC 133
Query 104558 AT 104559
||
Sbjct 134 AT 135
>seq193759
Length=801
Score = 104 bits (114), Expect = 5e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
||||| || ||||| || | || ||||| | || | || | ||| || ||||||||
Sbjct 365 TCTTT-TGGATATTGTAATTGGAAAGAGTACGGCCATATTTAAATTGCTTGCCAGCAAAG 307
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || |||||||| ||||| ||||| ||||| || |||||||| ||| | |||||
Sbjct 306 ATCCATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTGGCTATAACATTC 247
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | ||| | ||||||| | || | ||||| || |||| |||| |||||||||
Sbjct 246 TCGATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTTACAGATAAGGGTTTTTACA 188
Query 104549 AATATCTGCATTTTGT 104564
|| || || ||| |||
Sbjct 187 AAAATTTGAATTCTGT 172
>seq43178
Length=4857
Score = 84.2 bits (92), Expect = 5e-11
Identities = 87/113 (77%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652
||||| || || || || ||| || | | || ||||||||| ||||||| |||||
Sbjct 112 TGGAACTCAGCTCAAATTCAATTGATTAATGAGGGTAAAATGCATGGTTTCTTGAGAATG 53
Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAG 238705
|||||||| || ||||| |||||||||||| |||||| | |||||| ||||
Sbjct 52 TATTGGGCAAAGAAGATTCTTGAATGGACTTCTTCTCCAGAAGAAGCT-TTAG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147990015704028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |