Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq9075 122 5e-23 seq20522 116 2e-21 seq43899 91.5 8e-14 seq62368 87.8 9e-13 >seq9075 Length=8733 Score = 122 bits (134), Expect = 5e-23 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| || | |||||||||| |||||||||| |||||||||||||||||||| Sbjct 8070 AATAAAAAAGAAATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 8011 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| ||||||||||||||||||||| Sbjct 8010 CGACGCTCTAACCAACTGAGCTAATGGGCCG 7980 Score = 95.1 bits (104), Expect = 6e-15 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5218 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5277 Query 11516 TGAG 11519 |||| Sbjct 5278 TGAG 5281 >seq20522 Length=11045 Score = 116 bits (128), Expect = 2e-21 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| | ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 1085 TTAACGAAAAAAGTAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 1144 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 1145 ACGACGCTCTAACCAACTGAGCTAATGGGCC 1175 >seq43899 Length=4029 Score = 91.5 bits (100), Expect = 8e-14 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| | ||| |||||||||| |||||||||| |||||||||||||||||||| Sbjct 73 TACTAAAAAGT-AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 15 Query 11500 CGACGCTCTRACCA 11513 ||||||||| |||| Sbjct 14 CGACGCTCTAACCA 1 >seq62368 Length=306 Score = 87.8 bits (96), Expect = 9e-13 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 52 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260754889892116