Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq40345 197 2e-46 seq39919 149 1e-31 seq48477 138 2e-28 >seq40345 Length=1738 Score = 197 bits (218), Expect = 2e-46 Identities = 173/214 (81%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||| Sbjct 1521 CGCTAAGCGTCATCGTAAGGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCTAT 1580 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||||||||||||||| ||||| ||| |||||||| | | |||||||| | Sbjct 1581 TCGCCGTTTGGCTCGTCGTGGTGGTGTCAAACGTATCTCTGGACTCATTTATGAAGAAAC 1640 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||||| ||| | ||| | | | ||| |||| ||||||| || |||||| || Sbjct 1641 TCGTGGTGTTTTAAAG-TTTTCTTGGAAAACGTCATCCGTGATGCTGTCACCTATACTGA 1699 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645 |||||||| | ||||| |||||| | |||||| Sbjct 1700 ACACGCTAAGAGGAAGACCGTCACCGCTATGGAT 1733 >seq39919 Length=4154 Score = 149 bits (164), Expect = 1e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 16488 CTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAG 16547 |||| || ||| |||||||||||||||| ||||| ||| |||||||| | | ||||||| Sbjct 304 CTATTCGCCGTTTGGCTCGTCGTGGTGGTGTCAAACGTATCTCTGGACTCATTTATGAAG 363 Query 16548 AGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATA 16607 | | ||||| ||||||||| | ||| | | | ||| |||| ||||||| || |||| Sbjct 364 AAACTCGTGGTGTTTTGAAAGTTTTCTTGGAAAACGTCATCCGTGATGCTGTCACTTATA 423 Query 16608 CCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTC 16667 | || |||||||| | ||||| |||||| | |||||| | ||||| || ||||| | | Sbjct 424 CTGAACACGCTAAGAGGAAGACCGTCACCGCTATGGATGTTGTCTACGCTTTGAAGAGAC 483 Query 16668 AAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||| |||| | || || || ||| ||| Sbjct 484 AAGGACGTACTTTGTAAGGATTCGGAGGTT 513 >seq48477 Length=46533 Score = 138 bits (152), Expect = 2e-28 Identities = 195/274 (71%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||||| ||||| |||||||| |||||||||||||| || Sbjct 28225 GCCAAGCGTCATCGTAAAGTCCTTCGTGATAATATCCAAGGTATCACCAAGCCAGCAATT 28284 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || | ||||| | || ||||| || ||| | || ||| | | |||||||| | | Sbjct 28285 CGCCGCTTAGCTCGCAGAGGAGGAGTAAAACGTATTTCAGGACTAATTTATGAAGAAACT 28344 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||| || | || | ||| || || | || || || ||||| || Sbjct 28345 CGTGGAGTTTTAAAAGTATTTTTGGAGAATGTAATTCGAGACGCGGTCACTTATACAGAA 28404 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| | ||||| | || ||||| |||||| | || || Sbjct 28405 CACGCCAAGAGGAAGACTGTCACCGCTATGGACGTAGTTTATGCTTTGAAAAGACAGGGA 28464 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTA 16706 || | | || || |||||| |||||| || || Sbjct 28465 CGCACTTTGTACGGATTTGGAGGTTAATTTTATA 28498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78863957596413