Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq40345 197 2e-46
seq39919 149 1e-31
seq48477 138 2e-28
>seq40345
Length=1738
Score = 197 bits (218), Expect = 2e-46
Identities = 173/214 (81%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||
Sbjct 1521 CGCTAAGCGTCATCGTAAGGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCTAT 1580
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| |||||||||||||||| ||||| ||| |||||||| | | |||||||| |
Sbjct 1581 TCGCCGTTTGGCTCGTCGTGGTGGTGTCAAACGTATCTCTGGACTCATTTATGAAGAAAC 1640
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||||| |||||| ||| | ||| | | | ||| |||| ||||||| || |||||| ||
Sbjct 1641 TCGTGGTGTTTTAAAG-TTTTCTTGGAAAACGTCATCCGTGATGCTGTCACCTATACTGA 1699
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645
|||||||| | ||||| |||||| | ||||||
Sbjct 1700 ACACGCTAAGAGGAAGACCGTCACCGCTATGGAT 1733
>seq39919
Length=4154
Score = 149 bits (164), Expect = 1e-31
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 16488 CTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAG 16547
|||| || ||| |||||||||||||||| ||||| ||| |||||||| | | |||||||
Sbjct 304 CTATTCGCCGTTTGGCTCGTCGTGGTGGTGTCAAACGTATCTCTGGACTCATTTATGAAG 363
Query 16548 AGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATA 16607
| | ||||| ||||||||| | ||| | | | ||| |||| ||||||| || ||||
Sbjct 364 AAACTCGTGGTGTTTTGAAAGTTTTCTTGGAAAACGTCATCCGTGATGCTGTCACTTATA 423
Query 16608 CCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTC 16667
| || |||||||| | ||||| |||||| | |||||| | ||||| || ||||| | |
Sbjct 424 CTGAACACGCTAAGAGGAAGACCGTCACCGCTATGGATGTTGTCTACGCTTTGAAGAGAC 483
Query 16668 AAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||| |||| | || || || ||| |||
Sbjct 484 AAGGACGTACTTTGTAAGGATTCGGAGGTT 513
>seq48477
Length=46533
Score = 138 bits (152), Expect = 2e-28
Identities = 195/274 (71%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | ||||| ||||| |||||||| |||||||||||||| ||
Sbjct 28225 GCCAAGCGTCATCGTAAAGTCCTTCGTGATAATATCCAAGGTATCACCAAGCCAGCAATT 28284
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || | ||||| | || ||||| || ||| | || ||| | | |||||||| | |
Sbjct 28285 CGCCGCTTAGCTCGCAGAGGAGGAGTAAAACGTATTTCAGGACTAATTTATGAAGAAACT 28344
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||||| || | || | ||| || || | || || || ||||| ||
Sbjct 28345 CGTGGAGTTTTAAAAGTATTTTTGGAGAATGTAATTCGAGACGCGGTCACTTATACAGAA 28404
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | |||||||||||| | ||||| | || ||||| |||||| | || ||
Sbjct 28405 CACGCCAAGAGGAAGACTGTCACCGCTATGGACGTAGTTTATGCTTTGAAAAGACAGGGA 28464
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTA 16706
|| | | || || |||||| |||||| || ||
Sbjct 28465 CGCACTTTGTACGGATTTGGAGGTTAATTTTATA 28498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78863957596413
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |