Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 407 2e-108
seq55846 86.0 8e-12
>seq54449
Length=2482
Score = 407 bits (450), Expect = 2e-108
Identities = 670/952 (70%), Gaps = 21/952 (2%)
Strand=Plus/Plus
Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957
|| || | |||||||||||| | |||| | | | | ||| | || || ||||||||
Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350
Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017
|||||||||||||| || || || | ||||||||||||||||||| |||| || |||||
Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410
Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077
|| || | || ||||||| |||||||| | || || || ||||| || | |||||
Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGT 1470
Query 63078 ACTCGAGCCTTTATTATAGA-TTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCG 63136
| |||| |||||| | |||| | ||||| | |||| || |||| | |
Sbjct 1471 TGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCAT-TTTCATACTTAATATAGAGTTT 1529
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
|| || || || |||||||||| || |||||| ||||||| | |||||||| | ||
Sbjct 1530 CTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGAGA 1589
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255
||| ||| ||||| ||| || ||||||||||| | ||| |||||||| | ||| || ||
Sbjct 1590 CCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAGAA 1649
Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315
| |||||||| | || | || || |||||||| || || || | ||| | || | |
Sbjct 1650 A-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAATTCAA 1708
Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375
|||||| |||||||| |||||||| || || || | ||||||||| ||||| ||||
Sbjct 1709 AAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCCTC 1768
Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435
| ||||||| |||| || ||||| | ||||| ||||| |||| | ||| ||||
Sbjct 1769 CTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATTTG 1828
Query 63436 ATATACCATTGGTACCGGAGATATAGC--TTCCACTGGCACGAATA----TTACTAATTG 63489
| | ||||| || || || ||||| | || | || |||||| ||| |||
Sbjct 1829 AAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTAC--ATT- 1883
Query 63490 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT--A 63547
|| || ||||| ||||| || || || | || ||| | || |||| | | | |
Sbjct 1884 -TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACG-GACTTGAA 1940
Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607
||| || |||||| ||| | ||| | || |||||||| ||||| ||| | |
Sbjct 1941 GATCCCTTCTATGGAATCTGAGCACATTGTTAGAAGAAAACATGAAGACAATTGAGGCCT 2000
Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667
|| | ||| |||||| || ||||| ||||| |||| | ||||||| | ||
Sbjct 2001 TGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAAAG 2060
Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727
||| || ||||||||||||| ||||| || | |||||||||||| ||||| | |||
Sbjct 2061 ATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTCAT 2120
Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787
| |||||| |||||||||||| | || || ||||| ||||| | || || ||
Sbjct 2121 AAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCGCTC 2180
Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63839
||| |||||||| ||||| || |||||| ||| ||| || ||||| |||
Sbjct 2181 CAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATA 2231
Score = 334 bits (370), Expect = 9e-87
Identities = 656/962 (68%), Gaps = 26/962 (3%)
Strand=Plus/Plus
Query 61980 TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTAC 62039
|||| ||||| | |||||||| || | | || |||||||| ||||||| |||||||
Sbjct 263 TTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTAC 322
Query 62040 ATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAA 62099
||||| ||||| ||||| | |||| |||| |||||||| |||| ||| |||
Sbjct 323 ATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAG 382
Query 62100 CTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCT 62159
| || ||||||| ||| ||||| | || ||||||||||| || || || || || ||
Sbjct 383 TTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCA 442
Query 62160 GCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTT 62218
|||||||||| || | | ||| |||| |||||||||| ||||||||||| | |
Sbjct 443 GCAGCCATTTGAATTGTAG-ATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCT 501
Query 62219 AATATCTTCTGGAA-GGTTTGTATT--CTGAATGGATCCACCATCTGCCATAATCCTATT 62275
|||| | |||||| ||| ||| || || || |||| | || ||||| ||
Sbjct 502 GATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTT 561
Query 62276 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 62335
|| || ||||| | |||||| | ||| ||||| | | || | ||| | || ||
Sbjct 562 TTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTAC 621
Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395
||||| || || ||||| ||||||| || | |||||||| ||||| ||||| |
Sbjct 622 AACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAA 681
Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455
|| ||||| ||||||||||||||||||||||| ||||| ||||| ||||| | ||||||
Sbjct 682 TGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAA 741
Query 62456 ACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62513
|||||| | || ||| | | |||||||| ||||||| || ||||| ||| | |
Sbjct 742 TGAATTTCTTACTCC--ATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAA 799
Query 62514 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGA 62569
|| | || ||||| || || || ||||| |
Sbjct 800 TCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCT---- 855
Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62629
||| ||||||| || || | || || || ||||| ||||||||||| || || | ||
Sbjct 856 TCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGC 915
Query 62630 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCA 62687
|| |||||||| || || || || | || ||| || || || || || || ||
Sbjct 916 TCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCA--CTTTCG 973
Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747
| |||||| | ||||| || || || | || ||||| ||||| || ||||||||
Sbjct 974 TAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGC 1033
Query 62748 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62807
|| || | ||| || || |||||| || | ||||||||||||| |||||| |||
Sbjct 1034 CTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTATT 1093
Query 62808 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT--- 62864
|| || | ||||||| || | ||| || || |||| ||| | |||||| ||
Sbjct 1094 TTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCATATTTA 1153
Query 62865 CGCCCATCTATTACAAACATGTTCAAG-GCAACAGATGCCAGATTACAAACGGCTACCTC 62923
|| || | ||| | || || | ||| || | || || | |||||||||||| | ||
Sbjct 1154 CGATCAGCAGTTATATAC-TGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTC 1212
Query 62924 AT 62925
||
Sbjct 1213 AT 1214
>seq55846
Length=11783
Score = 86.0 bits (94), Expect = 8e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 28470 TTCTTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAATATGTGT 28529
|||||| || || ||||| || ||||||||||| || || ||||| | |||| |||
Sbjct 10817 TTCTTTAACTTGTGTTAGAGACCTCCAATCCATATTCGCACTTCCAATGTAAAAGTGTTG 10876
Query 28530 ATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 28569
|||||||| |||||||| || || ||||||||||| |||
Sbjct 10877 ATTATCAGCTATCCAAATCTTAGTGTGAAGAACTCCGCCT 10916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621148120699560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |