Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq54449 407 2e-108 seq55846 86.0 8e-12 >seq54449 Length=2482 Score = 407 bits (450), Expect = 2e-108 Identities = 670/952 (70%), Gaps = 21/952 (2%) Strand=Plus/Plus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || || | |||||||||||| | |||| | | | | ||| | || || |||||||| Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 |||||||||||||| || || || | ||||||||||||||||||| |||| || ||||| Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || | || ||||||| |||||||| | || || || ||||| || | ||||| Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGT 1470 Query 63078 ACTCGAGCCTTTATTATAGA-TTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCG 63136 | |||| |||||| | |||| | ||||| | |||| || |||| | | Sbjct 1471 TGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCAT-TTTCATACTTAATATAGAGTTT 1529 Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 || || || || |||||||||| || |||||| ||||||| | |||||||| | || Sbjct 1530 CTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGAGA 1589 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255 ||| ||| ||||| ||| || ||||||||||| | ||| |||||||| | ||| || || Sbjct 1590 CCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAGAA 1649 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | |||||||| | || | || || |||||||| || || || | ||| | || | | Sbjct 1650 A-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAATTCAA 1708 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 |||||| |||||||| |||||||| || || || | ||||||||| ||||| |||| Sbjct 1709 AAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCCTC 1768 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 | ||||||| |||| || ||||| | ||||| ||||| |||| | ||| |||| Sbjct 1769 CTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATTTG 1828 Query 63436 ATATACCATTGGTACCGGAGATATAGC--TTCCACTGGCACGAATA----TTACTAATTG 63489 | | ||||| || || || ||||| | || | || |||||| ||| ||| Sbjct 1829 AAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTAC--ATT- 1883 Query 63490 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT--A 63547 || || ||||| ||||| || || || | || ||| | || |||| | | | | Sbjct 1884 -TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACG-GACTTGAA 1940 Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 ||| || |||||| ||| | ||| | || |||||||| ||||| ||| | | Sbjct 1941 GATCCCTTCTATGGAATCTGAGCACATTGTTAGAAGAAAACATGAAGACAATTGAGGCCT 2000 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 || | ||| |||||| || ||||| ||||| |||| | ||||||| | || Sbjct 2001 TGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAAAG 2060 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 ||| || ||||||||||||| ||||| || | |||||||||||| ||||| | ||| Sbjct 2061 ATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTCAT 2120 Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 | |||||| |||||||||||| | || || ||||| ||||| | || || || Sbjct 2121 AAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCGCTC 2180 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63839 ||| |||||||| ||||| || |||||| ||| ||| || ||||| ||| Sbjct 2181 CAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATA 2231 Score = 334 bits (370), Expect = 9e-87 Identities = 656/962 (68%), Gaps = 26/962 (3%) Strand=Plus/Plus Query 61980 TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTAC 62039 |||| ||||| | |||||||| || | | || |||||||| ||||||| ||||||| Sbjct 263 TTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTAC 322 Query 62040 ATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAA 62099 ||||| ||||| ||||| | |||| |||| |||||||| |||| ||| ||| Sbjct 323 ATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAG 382 Query 62100 CTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCT 62159 | || ||||||| ||| ||||| | || ||||||||||| || || || || || || Sbjct 383 TTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCA 442 Query 62160 GCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTT 62218 |||||||||| || | | ||| |||| |||||||||| ||||||||||| | | Sbjct 443 GCAGCCATTTGAATTGTAG-ATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCT 501 Query 62219 AATATCTTCTGGAA-GGTTTGTATT--CTGAATGGATCCACCATCTGCCATAATCCTATT 62275 |||| | |||||| ||| ||| || || || |||| | || ||||| || Sbjct 502 GATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTT 561 Query 62276 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 62335 || || ||||| | |||||| | ||| ||||| | | || | ||| | || || Sbjct 562 TTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTAC 621 Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||||| || || ||||| ||||||| || | |||||||| ||||| ||||| | Sbjct 622 AACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAA 681 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || ||||| ||||||||||||||||||||||| ||||| ||||| ||||| | |||||| Sbjct 682 TGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAA 741 Query 62456 ACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62513 |||||| | || ||| | | |||||||| ||||||| || ||||| ||| | | Sbjct 742 TGAATTTCTTACTCC--ATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAA 799 Query 62514 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGA 62569 || | || ||||| || || || ||||| | Sbjct 800 TCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCT---- 855 Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62629 ||| ||||||| || || | || || || ||||| ||||||||||| || || | || Sbjct 856 TCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGC 915 Query 62630 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCA 62687 || |||||||| || || || || | || ||| || || || || || || || Sbjct 916 TCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCA--CTTTCG 973 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 | |||||| | ||||| || || || | || ||||| ||||| || |||||||| Sbjct 974 TAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGC 1033 Query 62748 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62807 || || | ||| || || |||||| || | ||||||||||||| |||||| ||| Sbjct 1034 CTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTATT 1093 Query 62808 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT--- 62864 || || | ||||||| || | ||| || || |||| ||| | |||||| || Sbjct 1094 TTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCATATTTA 1153 Query 62865 CGCCCATCTATTACAAACATGTTCAAG-GCAACAGATGCCAGATTACAAACGGCTACCTC 62923 || || | ||| | || || | ||| || | || || | |||||||||||| | || Sbjct 1154 CGATCAGCAGTTATATAC-TGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTC 1212 Query 62924 AT 62925 || Sbjct 1213 AT 1214 >seq55846 Length=11783 Score = 86.0 bits (94), Expect = 8e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 28470 TTCTTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAATATGTGT 28529 |||||| || || ||||| || ||||||||||| || || ||||| | |||| ||| Sbjct 10817 TTCTTTAACTTGTGTTAGAGACCTCCAATCCATATTCGCACTTCCAATGTAAAAGTGTTG 10876 Query 28530 ATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 28569 |||||||| |||||||| || || ||||||||||| ||| Sbjct 10877 ATTATCAGCTATCCAAATCTTAGTGTGAAGAACTCCGCCT 10916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621148120699560