Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq54449 210 6e-49 seq7579 158 3e-33 seq194783 111 4e-19 >seq54449 Length=2482 Score = 210 bits (232), Expect = 6e-49 Identities = 581/884 (66%), Gaps = 10/884 (1%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 || ||||| | |||| |||| | || || || ||| | ||| | || ||| | || || Sbjct 2159 ATAAATGGAAAAATTGCTGAAAGACCTCAACACATGCTTATGAGAGTCGCTGTAGGAATT 2100 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| | || | ||||| || ||||| |||||||| ||| || || | ||||| Sbjct 2099 CATGGAAACGACATAGATGCAGCTATTGAGACATATAATCTTTTATCTGAAAG-GTATTT 2041 Query 363550 -ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTG 363608 | |||||| | ||||| | | ||||| || | | || || ||||||| || Sbjct 2040 TATTCACGCCTCTCCAACGTTATTTGCTGCTGCCACACCAAGGCCTCAATTGTCTTCATG 1981 Query 363609 CTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTG 363668 |||||||||| |||| |||||||| || || ||||| | | || | | || Sbjct 1980 TTTTCTTCTAACAATGTGCTCAGATTCCATAGAAGGGATCTTCAAGTCCGTTGAACAATG 1921 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA 363728 |||| | ||||||||| |||||||||||| || || | ||| | |||| || | Sbjct 1920 TGCTATGATTTCCAAGTCTGCAGGCGGAATCGGATTAAATGTACACTGTATTCGGGCTAA 1861 Query 363729 --GAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | |||| || || || || ||| || ||||| | ||||||||| | | Sbjct 1860 AGGGACAGCTA--TTGCTGGAACTAATGGAACTTCAAATGGTTTAGTTCCCATGTTAAGA 1803 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || | ||| ||| | || || || || || || ||| | || || || Sbjct 1802 GTCTTCAATAATGTTGCCCGATATGTAGATCAAGGAGGCAACAAGAGGCCTGGAGCATTC 1743 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||| | || ||| ||| | ||||||||||| ||| | || | ||||||| Sbjct 1742 GCAATTTATTTGGAACCTTGGCATTCAGATATTTTTGAATTTTTGGATTTGAAGAAAAAC 1683 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || |||||||| || || || | ||||| ||||| || | ||| || | || Sbjct 1682 ACAGGAAAAGAAGAGAACCGAGCTAGAGATCTTTTCTACGCTTTATGGATTCCAGATTTG 1623 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 |||||||| || || ||||| | | ||||||| || | || || ||| ||||||| Sbjct 1622 TTTATGAAACGTGTTGAGGCTGACGAAGATTGGTCTCTTATGTGTCCTCACAAATGTCCC 1563 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTG--CTCTATACGAAAAGTATGAATCGG 364084 || | |||||| |||||||| || | || ||||||| || ||||||| | Sbjct 1562 GGATTGCACGATGTTTGGGGTGAAGAATTTGAGAAACTCTATATTAA--GTATGAAAATG 1505 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 | ||||| || | || ||| || || | || |||| ||| || || || || | Sbjct 1504 AAGGAAAAGCAAACAGGAAAATAAAAGCTCAACAACTCTGGTATGCAATTATTGAGTCAC 1445 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 | | || || ||||| || |||||||||||||||||| | |||||| | ||| || | Sbjct 1444 AAGTAGAAACTGGAACTCCATATATGTTGTACAAAGATGCTTGCAACAGAAAGAGTAATC 1385 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 | || | ||||||||||| || || || || || || || || | || || | | Sbjct 1384 AACAAAATGTTGGTACAATTAAGTGTAGTAATCTCTGCACTGAAATCGTAGAGTATTCTG 1325 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308 |||| || || | ||||| ||||| | || || || || ||| Sbjct 1324 CTCCAGATGAAATCGCCGTTTGTAATTTAGCTTCCATAGCACTT 1281 Score = 93.3 bits (102), Expect = 1e-13 Identities = 267/409 (65%), Gaps = 4/409 (1%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| ||||| || || | |||||||| || | |||||||| Sbjct 732 GCACCAATGCCAACTGCTTCAACTGCTCAAATTTTGGGAAACAATGAATCATTCGAACCA 673 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | ||| ||| ||||| || || || | || || || || | || || || | Sbjct 672 TATACTTCAAATATTTATAACCGTCGAGTATTATCTGGTGAGTTCCAAGTTGTAAACCAC 613 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | | ||||||| | | || | | | |||| || ||||| ||| | || Sbjct 612 CATTTGCTCAAGGACTTAACAGAGCTTGATTTATGGGACGATGATATGAAAAACGAAATT 553 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || | ||||||| | || | || | || |||||| | || | | || Sbjct 552 ATTTCAAAACGTGGTTCTATACAAGAAATCGAAAGAATTCCAGCACATATCAGAGAACTT 493 Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049 || ||||| || |||||||| ||||| | || ||| | ||||| || ||| | ||| Sbjct 492 TATAAAACTGTTTGGGAAATATCCATTAAATCTACAATTCAAATGGCTGCTGATAGAGGT 433 Query 365050 GCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG--CCAACCTCCGCCA 365107 |||||||| ||| || ||||| || || |||||||| ||| |||| || | | Sbjct 432 GCTTTTATTGATCAAAGTCAGTCATTCAA--TATTCATGTAGCAGAACCAAACTATGGAA 375 Query 365108 AGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | | || || ||||||||||||| ||||||| ||||| || ||||| Sbjct 374 AATTAACTTCAATGCATTTCTACGCTTGGAAATTGGGTCTGAAAACAGG 326 >seq7579 Length=34747 Score = 158 bits (174), Expect = 3e-33 Identities = 367/542 (68%), Gaps = 21/542 (4%) Strand=Plus/Plus Query 111290 AATGCGTTTTAATCTGTCAACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAA 111349 |||| | |||||||| | ||| |||||| | | || ||||| | || |||| Sbjct 13831 AATGAGGTTTAATCTCAGAGATCAGTTTCCATTATTAACTACAAAAAGGGTATTCTGGAG 13890 Query 111350 GGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGC 111409 || ||| ||||||||||| ||||| || || || ||||| || | || | Sbjct 13891 AGGTGTTGCAGAAGAACTTCTTTGGTTCATCAAAGGTCAAACTAATGCCAAA-ATTTTAC 13949 Query 111410 A-GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG 111468 | | |||||| || ||||| ||||||||||| | | | || || | ||| | || Sbjct 13950 AAGAAAAAAACGTGAAAATATGGGATGGAAACAGCACCAGGGAATTCTTGGATAAATGTG 14009 Query 111469 GTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACT 111528 || || || | |||||||| ||| | || ||||| || ||||| |||||||| || | Sbjct 14010 GTTTTACTGATAGGGAAGAAGGGGATTTGGGGCCAGTCTATGGATTCCAATGGCGTCATT 14069 Query 111529 TTGGTGCAGACTACAAAAC----CATGCACGACTCATATGATTCA---CAGGGAACTGAT 111581 |||| ||||| || ||||| |||| |||||| ||||| || ||| |||| Sbjct 14070 TTGGGGCAGAATATAAAACTTGTCATG-ACGACT------ATTCAAACCAAGGAGTTGAT 14122 Query 111582 CAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATG 111641 ||||| | |||||||| | ||| ||||| || || || | | || |||| Sbjct 14123 CAATTGAATGATGTCATTCAAAGAATCAAGAATAATCCTACGGACAGAAGGATCTGTATG 14182 Query 111642 AGTGCATGGAACCCAAATGCAT-TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTG 111700 || ||||||||| || || | |||||||||| | ||||| |||||| | | || Sbjct 14183 TCAGCTTGGAACCCAG-TGGATCTTCCAAAAATGGCATTACCACCTTGTCATTGTTT-TG 14240 Query 111701 C-CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATA 111759 | || |||||||| || || | | | ||||| ||||| || | ||||||||| Sbjct 14241 CTCAATTTTATGTTCAAGATGATGAGTTATCATGTTTGATGTACCAAAGGTCTGCTGATG 14300 Query 111760 TTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTC 111819 |||| || || || || || ||||||||||||||||| || | |||| | || |||| Sbjct 14301 TTGGGCTCGGAGT-CCTTTCAATATTGCAAGTTACGCTTTATTGACTTATATGATTGCTC 14359 Query 111820 AT 111821 || Sbjct 14360 AT 14361 >seq194783 Length=813 Score = 111 bits (122), Expect = 4e-19 Identities = 293/442 (66%), Gaps = 4/442 (1%) Strand=Plus/Minus Query 111357 GTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAA 111416 || |||||||| |||||||| | | || || |||| || | |||| || || Sbjct 654 GTTGAAGAACTGTTGTGGTTTGTGAGAGGTCAAACTAATGTTAAGGTACTTCAAGACAAG 595 Query 111417 AATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC 111476 || | || || ||| ||| ||| | || | || || ||||| | ||||||| Sbjct 594 AACATTAAGATCTGGAATGACAATTGCACAAGAGATTTCTTAGATAAATGTGGTCTTACA 535 Query 111477 GACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 |||| |||||||| || | |||||||| || || ||||||||||| || || || || Sbjct 534 GACAGAGAAGAAGGAGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTCGGGGCT 475 Query 111537 GACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTC 111596 || |||||||| |||||| ||| | | | || ||| || || ||||| Sbjct 474 GAATACAAAACTTGTCACGACGATTATACTGGAAAAGGCGTTGACCAGTTGAGCAATGTA 415 Query 111597 ATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCA 111656 || | |||||| | ||| |||| | | | ||| |||| || ||||| || Sbjct 414 ATCCACACAATTAAAACCAATCCAAATGACAGAAGGATTTGCATGACAGCTTGGAATCCT 355 Query 111657 AATG-CATTGGAAAAAATGGCACTTCCACCATGTCAT-CTTATGTGCCAGTTTTATGTAC 111714 | |||| ||||||||| || |||||||||||| || ||| ||||||||||| | Sbjct 354 GTGGACATT-CCAAAAATGGCCCTCCCACCATGTCATAGTTTTGT-ACAGTTTTATGTTC 297 Query 111715 ACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTC 111774 | | || |||||| || |||| || || ||| ||||| | | | || |||| Sbjct 296 AAAATGGAGAGCTTTCTTGTTCTTTGTACCAAAGAGCTGGAGATATGGCTTTAGGAGTTC 237 Query 111775 CGTTTAATATTGCAAGTTACGC 111796 | || |||||||| || || || Sbjct 236 CATTCAATATTGCCAGCTATGC 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299495395974062