Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq229830 138 1e-27 seq80618 125 7e-24 seq160753 113 4e-20 seq54449 96.9 3e-15 >seq229830 Length=7395 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||| || || || | ||| || || ||||||||||||||||||||| Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | || ||||| ||| |||| ||||| |||||||| || ||| Sbjct 5725 AAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 5666 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| ||| |||| | | | || | |||||||| | || | Sbjct 5665 ATTCCTTCCTTGTCC-TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 5607 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||||| || | ||| || |||||||||||||| Sbjct 5606 CTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 5559 >seq80618 Length=357 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| || || | ||| || |||||||| |||||||| ||| | Sbjct 350 CCACCACGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 291 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||||| || ||| |||| ||||| || || || || ||| Sbjct 290 AAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 231 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || ||||| | || | || |||| | || | Sbjct 230 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACT 171 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| || | ||| || |||||||||||||| Sbjct 170 TCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124 >seq160753 Length=592 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || ||||| | ||| ||||||||||||||||| ||||| | Sbjct 137 CCACCACGGAGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGAC 196 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | |||||| || ||| |||| ||||| || || || |||||| Sbjct 197 AATGTGCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGG 256 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || || ||| | | ||| | || || | | ||| | Sbjct 257 ATACCTTCCTTATCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACT 316 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || || | |||||| |||||||||||||| Sbjct 317 TCAAGGGTGATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| || || || || | || ||||||||||| ||||| ||||| | | Sbjct 365 CCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGAT 424 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || | || ||||| ||| |||| ||||| ||||| || ||||| Sbjct 425 AAT-GTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGG 483 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||| || ||| || ||||| | || | || || | | || | Sbjct 484 GATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAAC 543 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || || | ||||| ||||| |||||||| Sbjct 544 TTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 >seq54449 Length=2482 Score = 96.9 bits (106), Expect = 3e-15 Identities = 274/421 (65%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || || || ||||| || | || || ||||| ||| | || || || | Sbjct 614 TGGTTTACAACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATAT 673 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 ||||| || || || || || |||| |||||||| || | || || ||||| || Sbjct 674 GGTTCGAATGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCA 733 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | |||||||||||| | | || || ||| || | |||||||| | ||||||| Sbjct 734 ATCAATAATGAATTTCTTACTCCATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCC 793 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || | ||| || | ||||||||| || || || || || || | ||| | ||| Sbjct 794 CACAAATCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGG 853 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 || || | | | | ||| | ||| ||| || || || ||||| || || ||| Sbjct 854 CTTCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGA 913 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || || ||||||||||||| |||||| || |||| | || | || || ||| Sbjct 914 GCTCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCACTTTCG 973 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 || || |||| || | |||||||| | || || |||| || | ||||| ||| Sbjct 974 TAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGC 1033 Query 145475 C 145475 | Sbjct 1034 C 1034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470649621133440