Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq44627 143 2e-29 seq173138 136 3e-27 seq103615 136 3e-27 seq58847 136 3e-27 seq80618 134 9e-27 seq160753 129 4e-25 seq35335 118 7e-22 seq229830 116 2e-21 seq212097 113 3e-20 seq220204 107 1e-18 >seq44627 Length=16465 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || | || || ||||| ||||| | ||| ||||| ||||| |||||||| Sbjct 8118 ATGGGTTCCGTCAATGTTAATCGCAATGTCACAGACATTTTCTATCGCTATAAAATGCCC 8059 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 | || ||||| || ||||| || ||||| || ||||||||||| ||||| || ||| Sbjct 8058 AGAATTACAGCCAAAGTTGAGGGCAAAGGAAATGGAATTAAAACCGTTATTGTTAATATG 7999 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| || ||||| | ||||| || || || || | || |||||||| || ||| Sbjct 7998 GCAGAAGTAGCAAAGGCTATTGGACGGCCCGCTACTTATACAACCAAATATTTTGGATGC 7939 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||||||| ||||| || || |||||| |||| Sbjct 7938 GAACTTGGAGCTCAAACACAATTTGATTACAA 7907 >seq173138 Length=647 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 319 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 378 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 379 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 413 >seq103615 Length=417 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 264 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 323 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 324 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 358 >seq58847 Length=278 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 149 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 90 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 89 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 55 >seq80618 Length=357 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| ||||| || |||||||| || ||||| || | Sbjct 352 TACCACCACGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGG 293 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || ||||| |||||||| || || | ||||||||||| | | Sbjct 292 ACAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTG 233 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| || || ||| ||||| | | || || | ||||| Sbjct 232 GGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAA 173 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| || ||||| ||||| || || ||||| |||||||| Sbjct 172 CTTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124 >seq160753 Length=592 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||||||||| || |||||||||||| || ||||| | Sbjct 135 TACCACCACGGAGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTG 194 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || || || |||||||| || || | ||||||||||| | | Sbjct 195 ACAATGTGCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAG 254 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || ||| || ||| || |||| | || ||| |||| Sbjct 255 GGATACCTTCCTTATCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAA 314 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || |||||||| || ||||| ||||| ||||| |||||||| Sbjct 315 CTTCAAGGGTGATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| |||||||| ||||||||| || || ||||| | Sbjct 363 TACCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTG 422 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || ||| | || || |||||||| || || || || | ||||| ||||| | | Sbjct 423 ATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAG 482 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| ||| || || ||| || || | | || || ||||| Sbjct 483 GGATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAA 542 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || |||||||| || ||||||||||| ||||| |||||||| Sbjct 543 CTTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38193 CGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACA 38252 ||||||||||| | |||| ||||| || ||| ||| || ||| || |||| || Sbjct 11 CGTTGTTGATCTGGAGGGATACCTTCCTTATCCTGAATCTTAGCCTTAACGTTCTCGATG 70 Query 38253 GTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATC 38312 || ||| |||||||||||| || || || ||||| ||||||||||| ||||| || Sbjct 71 GTGTCTGATGGTTCAACTTCTAAAGTGATGGTCTTACCAGTCAAGGTTTTGACGAAGATT 130 Query 38313 TGCAT 38317 ||||| Sbjct 131 TGCAT 135 >seq35335 Length=15304 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||| ||||| ||||||| | |||||| | Sbjct 7512 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAAATAGTTGATAGGGACAGTAGGAATCTCAT 7571 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||| |||||||||||||||| Sbjct 7572 TAATCCATTCATGCGCGTTACTAATTAGATGACGA 7606 >seq229830 Length=7395 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | ||| || || ||||| || || || |||||||| || || || | Sbjct 6015 TACCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTG 5956 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || |||||||| || ||||| || | ||||||||||| | | Sbjct 5955 ACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAG 5896 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| || || ||| || || | | || || | |||| Sbjct 5895 GAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAA 5836 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||| || ||||| || ||||||||||| ||||| || ||||| Sbjct 5835 CTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| | ||| | ||||| |||||||| |||||||| |||||||| || Sbjct 6242 TACCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGC 6183 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || |||||||| |||||||| || || |||||| |||| | | Sbjct 6182 TTAAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTGT-GATCTGGAG 6124 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||| || ||| || || | | || || |||| Sbjct 6123 GAATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAA 6064 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| |||||||| || || ||||| || || ||||| || ||||| Sbjct 6063 CTTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015 >seq212097 Length=1187 Score = 113 bits (124), Expect = 3e-20 Identities = 81/92 (88%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1084 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 1025 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | |||| ||||| ||||| ||||||||||||| Sbjct 1024 T-ATCCATTCATACGCGTAACTAATTAGATGA 994 >seq220204 Length=2162 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1245 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 1304 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||| |||| Sbjct 1305 GGTTATATTTAGTCTTA 1321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334004051592071