Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq54449 399 3e-106 seq11307 95.1 2e-14 seq55846 86.0 8e-12 >seq54449 Length=2482 Score = 399 bits (442), Expect = 3e-106 Identities = 672/954 (70%), Gaps = 25/954 (3%) Strand=Plus/Plus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || || | |||||||||||| | |||| | | | | ||| | || || |||||||| Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 |||||||||||||| || || || | ||||||||||||||||||| |||| || ||||| Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 || || | || ||||||| |||||||| | || || || ||||| || | ||||| Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGT 1470 Query 62933 ACTCGAGCCTTTATTATAGA-TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCG 62991 | |||| |||||| | |||| | || || | |||| || |||| | | Sbjct 1471 TGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCAT-TTTCATACTTAATATAGAGTTT 1529 Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 || || || || |||||||||| || || ||| ||||||| | |||||||| | || Sbjct 1530 CTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGAGA 1589 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63110 ||| ||| ||||| ||| || ||||||||||| | ||| |||||||| | ||| || || Sbjct 1590 CCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAGAA 1649 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 | |||||||| | || | || || |||||||| || || || | ||| | || | | Sbjct 1650 A-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAATTCAA 1708 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 |||||| |||||||| |||||||| || || || | ||||||||| ||||| |||| Sbjct 1709 AAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCCTC 1768 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 | ||||||| |||| || ||||| | ||||| ||||| |||| | |||||| | Sbjct 1769 CTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATTTG 1828 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTG--GCACGAATAT----TACTAATTG 63344 | || ||||| || || || |||||| | || || |||||| ||| ||| Sbjct 1829 AAGTTCCATTAGTTCC--AGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTAC--ATT- 1883 Query 63345 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA-TCATAG 63403 || || ||||| ||||| || || || | || ||| ||| |||| | | || Sbjct 1884 -TAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTGTTC-AACGGACTTGAAG 1941 Query 63404 ATGCCCTCTATACTATC--ATC-CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 || || ||||| ||| | | ||| ||||| | |||||||| ||||| ||| | Sbjct 1942 ATCCCTTCTATGGAATCTGAGCACAT--TGTTA-GAAGAAAACATGAAGACAATTGAGGC 1998 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGT 63520 | || | ||| |||||| || ||||| |||||| |||| | ||||||| | Sbjct 1999 CTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAA 2058 Query 63521 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 63580 ||||| || ||||||||||||| ||||| || | |||||||||||| ||||| | | Sbjct 2059 AGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTC 2118 Query 63581 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 63640 || | |||||| |||||||||||| | || || ||||| ||||| | || || Sbjct 2119 ATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAGCGC 2178 Query 63641 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63694 ||||| |||||||| ||||| || |||||| ||| ||| || ||||| ||| Sbjct 2179 TCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATA 2231 Score = 334 bits (370), Expect = 1e-86 Identities = 655/961 (68%), Gaps = 24/961 (2%) Strand=Plus/Plus Query 61835 TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTAC 61894 |||| ||||| | |||||||| || | | || |||||||| ||||||| ||||||| Sbjct 263 TTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTAC 322 Query 61895 ATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAA 61954 ||||| ||||| ||||| | |||| |||| |||||||| |||| ||| ||| Sbjct 323 ATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAG 382 Query 61955 CTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCT 62014 | || ||||||| ||| ||||| | || ||||||||||| || || || || || || Sbjct 383 TTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCA 442 Query 62015 GCAGCCATTTTTATAATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTT 62073 |||||||||| || | | ||| |||| |||||||||| ||||||||||| | | Sbjct 443 GCAGCCATTTGAATTGTAG-ATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCT 501 Query 62074 AATATCTTCTGGAA-GGTTTGTATT--CTGAATGGATCCACCATCTGCCATAATCCTATT 62130 |||| | |||||| ||| ||| || || || |||| | || ||||| || Sbjct 502 GATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTT 561 Query 62131 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 62190 || || ||||| | |||||| | ||| ||||| | | || | ||| | || || Sbjct 562 TTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTAC 621 Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||||| || || ||||| ||||||| || | |||||||| ||||| ||||| | Sbjct 622 AACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAA 681 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || ||||| ||||||||||||||||||||||| ||||| ||||| ||||| | |||||| Sbjct 682 TGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAA 741 Query 62311 ACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62368 |||||| | || ||| | | |||||||| ||||||| || ||||| ||| | | Sbjct 742 TGAATTTCTTACTCC--ATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAA 799 Query 62369 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGA 62424 || | || ||||| || || || ||||| | Sbjct 800 TCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCT---- 855 Query 62425 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62484 ||| ||||||| || || | || || || ||||| ||||||||||| || || | || Sbjct 856 TCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGC 915 Query 62485 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG-ATCT-TGCGCTTCCAGGCTATCA 62542 || |||||||| || || || || | || ||| || | || || || || || || Sbjct 916 TCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCA--CTTTCG 973 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 | |||||| | ||||| || || || | || ||||| ||||| || |||||||| Sbjct 974 TAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGC 1033 Query 62603 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62662 || || | ||| || || |||||| || | ||||||||||||| |||||| ||| Sbjct 1034 CTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTATT 1093 Query 62663 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT--- 62719 || || | ||||||| || | ||| || || |||| ||| | |||||| || Sbjct 1094 TTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCATATTTA 1153 Query 62720 CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 62779 || || | ||| | || || | ||| | || || | |||||||||||| | ||| Sbjct 1154 CGATCAGCAGTTATATACTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCA 1213 Query 62780 T 62780 | Sbjct 1214 T 1214 >seq11307 Length=4647 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 63814 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 63873 |||| ||| || ||||||||||||| || || || || |||||||| |||| || || Sbjct 3747 AAATGCTTTCTTAGTTTCTTTGTGTAAGTTGGAAACAGCAATTCTAGCAGCTAAGATAGC 3806 Query 63874 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 |||||| | ||||| ||| || |||| ||||| |||| || || ||| | |||| ||| Sbjct 3807 ATAATCTGCATGTTTTGTGGTCAAAGTTGCTGCCGTTTCAGCGGCGAGATTATCCAGTTC 3866 Query 63934 TACCGTTGTTACACC 63948 | || |||||||| Sbjct 3867 TTGAGTCGTTACACC 3881 >seq55846 Length=11783 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27515 CCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATA 27574 |||| ||| || || || |||| || |||||||||||||| || ||||| | |||| Sbjct 10812 CCTAGTTCTTTAACTTGTGTTAGAGACCTCCAATCCATATTCGCACTTCCAATGTAAAAG 10871 Query 27575 TGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 27619 ||| |||||||| |||||||| || || ||||||||||| ||| Sbjct 10872 TGTTGATTATCAGCTATCCAAATCTTAGTGTGAAGAACTCCGCCT 10916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631802062863600