Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq229830 149 5e-31 seq80618 114 1e-20 seq160753 86.0 5e-12 >seq229830 Length=7395 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || ||| |||||||| | ||||| ||| | ||| Sbjct 5787 ATGCAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCT 5846 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| ||||| || || ||| Sbjct 5847 GACACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 5906 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||||||||| ||||| | ||||| || || || || Sbjct 5907 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACATTGTCAGACTATAAC 5966 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || || |||||||| || | || |||||||| Sbjct 5967 ATTCAAAAAGAATCTACACTCCATTTAGTATTACGTCTCAGAGGAGG 6013 Score = 136 bits (150), Expect = 3e-27 Identities = 171/231 (74%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || | || || | ||||| ||| | ||| Sbjct 6015 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCT 6074 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||||||||| ||||| || || Sbjct 6075 GACACAATTGAAAACGTCA---AGGCTAAGATTCA-AGACAAAGAAGGTATTCCTCCAGA 6130 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 | ||| || | || |||||||| |||||||| ||||||| ||||||| | |||| || Sbjct 6131 TC-ACAACGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACTTTAAGCGACTA 6189 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| ||||| ||||| || || || || || || | || ||||||| Sbjct 6190 CAATATCCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGAGGAGG 6240 Score = 131 bits (144), Expect = 1e-25 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| |||||| | || || | || || || | || Sbjct 5559 ATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCATCC 5618 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| ||||| ||||| || || || ||| Sbjct 5619 GATACTATTGAA--AATGTTAAAGCTAAAATTCAG-GACAAGGAAGGAATCCCCCCAGAC 5675 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || || || ||||||||||| ||||||| |||||| || |||||||| Sbjct 5676 CAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATTAC 5735 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||||||||| || || || || || Sbjct 5736 AACATTCAAAAAGAATCAACCCTTCACTTGGT 5767 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| || || |||||||| | ||||||||||| || || | ||| Sbjct 32 GACAAGGAAGGCATTCCTCCAGATCAACAGCGTCTCATTTTTGCCGGAAAGCAGCTCGAA 91 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||| |||||| | |||| || || |||||||||||||| || || || || || Sbjct 92 GATGGCCGCACTCTTAGCGACTATAACATTCAAAAAGAATCTACTCTCCACTTGGT 147 >seq80618 Length=357 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||||||||| ||||| |||| || | ||||| || | || Sbjct 123 AATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTC 182 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| || ||| ||||||||||| || ||||| || || Sbjct 183 CGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCA 242 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| || ||||| ||||||| ||||| || ||| ||||| Sbjct 243 ACAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCACCTTGTCCGACTACAA 302 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || ||||| ||||| || || || || ||| Sbjct 303 CATCCAAAAGGAATCTACCCTTCACTTGGTG 333 >seq160753 Length=592 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || ||| | ||||| | ||||| || | ||| Sbjct 591 ATGCAGATCTTCGTCAAAACCTTGACTGGCAAAACTATCACCCTTGAAGTTGAACCATCT 532 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| || |||||||| || || || || || Sbjct 531 GACACAATTGAAAACGTCAAGGCTAAGATCCAGGATAAAGAAGGAATCCCTCCAGATCAG 472 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || ||||||||||| ||||||| ||||| | ||||| || Sbjct 471 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTATCAGATTATAAC 412 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || || || || || Sbjct 411 ATCCAAAAGGAGTCAACTCTTCACTTGGTTCT 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432107829736415