Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq54449 141 8e-29 seq229830 138 9e-28 seq160753 136 3e-27 seq80618 132 4e-26 >seq54449 Length=2482 Score = 141 bits (156), Expect = 8e-29 Identities = 306/458 (67%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||| || || |||| ||||| | || || || || || || ||||||||||| ||| Sbjct 269 TTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTACATTCCT 328 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||||| ||| |||||||| || | || || | || || | | ||| | ||| Sbjct 329 GTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAGTTTGGT 388 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | | | |||||| ||||| ||||||||||||||||| | || | ||| |||||| Sbjct 389 TCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCAGCAGCC 448 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || ||| | ||| | |||||||| || ||||| ||||| ||||| | ||| Sbjct 449 ATTTGAATTGTAGATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCTGATATGT 508 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 ||| ||| ||| || | || | || |||| |||||||| |||| ||| Sbjct 509 GCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTTTTTCATA 568 Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138 | |||| | |||| || | | || || | | ||| | | ||||| ||||| Sbjct 569 TCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTACAACTTGG 628 Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCA 129198 || ||||| | || || || || ||||| || || | || || || |||||| Sbjct 629 AACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAATGATTCA 688 Query 129199 TTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCAT 129236 ||||| || || |||||||| |||| || || ||||| Sbjct 689 TTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCAT 726 Score = 114 bits (126), Expect = 1e-20 Identities = 351/533 (66%), Gaps = 21/533 (4%) Strand=Plus/Plus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || || || ||||| || ||||| |||| | | || ||||| || ||||| | | Sbjct 1288 ATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTG 1347 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 || | ||||||| ||||| || || | || | ||||||||| || ||||||||||| Sbjct 1348 CAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCA 1407 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC 129876 |||||||||| ||| || || || || ||||| ||||| | || | ||| | | | | Sbjct 1408 TCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAAT--TGCATACC 1465 Query 129877 A-AG-TCTCGAGCCTTGAT----CTGTCTTACAAATTTGCCACATTTCTCGTATGCCACA 129930 | || | | |||| || || |||| || | ||| | ||||| || || | | Sbjct 1466 AGAGTTGTTGAGCTTTTATTTTCCTGT-TTGC--TTTTCCTTCATTT-TCATACTTAATA 1521 Query 129931 TACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAA---CGGCGATTCACGCGGA 129987 || |||| ||||||||| || || ||| |||| || ||| | ||| Sbjct 1522 TAGAGTTTCTCAAATTCTTCACCCCAAAC---ATCGTGCAATCCGGGACATTTGTGAGGA 1578 Query 129988 CACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCAC 130047 ||||| | | ||| | | || || || || ||||||||||||||||| || | ||| Sbjct 1579 CACATAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCAT 1638 Query 130048 AGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCA 130107 | ||||| || | ||||| ||| | || || || |||| |||| || Sbjct 1639 AAAGCGTAGAAAAGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCC 1698 Query 130108 AGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC---CTTC 130164 | || || |||| || | ||||| ||||| | ||||||||| | ||| || | || Sbjct 1699 AAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTC 1758 Query 130165 CGTTTGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 ||||| ||||| || || | || | |||| ||| |||||| ||||| Sbjct 1759 TTGTTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACAT 1811 >seq229830 Length=7395 Score = 138 bits (152), Expect = 9e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || ||||| || |||||||| | || | || || ||| | Sbjct 5556 AATATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCA 5615 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | ||| |||||||| |||||||| || || || || || Sbjct 5616 TCCGATACTATTGAAAATGTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCAGAC 5675 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || |||||| | || || || |||||||| || || ||| ||||| | ||||||| Sbjct 5676 CAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATTAC 5735 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| ||| | || || || ||||| | || |||||| Sbjct 5736 AACATTCAAAAAGAATCAACCCTTCACTTGGTATTGCGTCTTCGTGGAGGT 5786 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || || || ||||| |||| | ||||| || | | Sbjct 5787 ATGCAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCT 5846 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || |||||||| || |||||||| || |||||| Sbjct 5847 GACACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 5906 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| |||||||| || || || ||||| | || || || ||| Sbjct 5907 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACATTGTCAGACTATAAC 5966 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || | |||||||| || || | | |||||| Sbjct 5967 ATTCAAAAAGAATCTACACTCCATTTAGTATTACGTCTCAGAGGAGGT 6014 Score = 105 bits (116), Expect = 6e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| || || || |||||||| || ||||| || |||||||| ||||| || |||| Sbjct 15 TCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAACAGCGTCTCATTTTTG 74 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 |||| || ||| | || ||| |||||| | ||| || ||||||||||||||||| | Sbjct 75 CCGGAAAGCAGCTCGAAGATGGCCGCACTCTTAGCGACTATAACATTCAAAAAGAATCTA 134 Query 22415 CCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | | || || || ||||| | |||||||| Sbjct 135 CTCTCCACTTGGTCTTGCGTCTTCGCGGAGG 165 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || || || || | || | ||||| || | | Sbjct 6015 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCT 6074 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || ||||||||||| || |||||||| || |||| | Sbjct 6075 GACACAATTGAAAACGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCTCCAGATC-A 6133 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| ||||| || || ||| ||||| | ||| ||||| Sbjct 6134 CAACGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACTTTAAGCGACTACAAT 6193 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| || | || || ||| | || | || |||||| Sbjct 6194 ATCCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGAGGAGGT 6241 >seq160753 Length=592 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || || ||||| |||| |||||||| || | | Sbjct 363 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACTATCACCCTTGAAGTTGAGCCATCA 304 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || |||||||| ||||| ||||| || || |||||| Sbjct 303 GACACCATTGAGAACGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCAGATCAA 244 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || ||||| || ||| ||||| | || ||||| ||| Sbjct 243 CAACGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGCACATTGTCAGATTATAAC 184 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||| | ||||| || ||||| | || || ||| Sbjct 183 ATTCAAAAGGAGTCAACCCTTCATTTGGTATTGCGTCTCCGTGGTGGT 136 >seq80618 Length=357 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||||| || ||||| || | || | ||||| ||| | || Sbjct 124 ATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTCC 183 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||| || || || ||||| |||||| Sbjct 184 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAA 243 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || || || || ||| |||||| | ||||| |||||| Sbjct 244 CAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCACCTTGTCCGACTACAAC 303 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| ||| | || || || ||||| | || || ||| Sbjct 304 ATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCGTCTCCGTGGTGGT 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418546124782165