Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7579 123 2e-23 seq188621 107 2e-18 seq194783 102 7e-17 >seq7579 Length=34747 Score = 123 bits (136), Expect = 2e-23 Identities = 372/565 (66%), Gaps = 7/565 (1%) Strand=Plus/Minus Query 20214 TGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGG 20273 |||||| ||| || || | | |||||| | |||||||| ||||||||| || | | Sbjct 14395 TGTGAACAAAGTCTCCAACTTTGAGACCACAGAGATGAGCAATCATATAAGTCAATAAAG 14336 Query 20274 AATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCT 20333 || || ||||| || |||||| |||| | || | || | ||||| || |||| | Sbjct 14335 CGTAACTTGCAATATTGAAAGGA-CTCCGAGCCCAACATCAGCAGACCTTTGGTACATCA 14277 Query 20334 GACAGGAAAGCTCACCGTCAGCTACATAAAATTGA-CATAACAAGTGACAGGGCGGAAGC 20392 ||| || | |||| | || |||||||||||| || ||||| ||||| || || | Sbjct 14276 AACATGATAACTCATCATCTTGAACATAAAATTGAGCAAAACAA-TGACAAGGTGGTAAT 14218 Query 20393 GCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGA 20452 ||||| | | ||| | |||||||| || ||||| ||| ||||| || ||| Sbjct 14217 GCCATTTTTGGAAGATCCACTGGGTTCCAAGCTGACATACAGATCCTTCTGTCCGTAGGA 14158 Query 20453 TTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCA 20512 ||||| || ||| | | | | |||||| |||| || ||| || |||||| Sbjct 14157 TTATTCTTGATTCTTTGAATGACATCATTCAATTGATCAACTCCTTGGTTTGAATAGTCG 14098 Query 20513 GCAT-CCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCC 20571 ||| | || || | |||||||| || | ||| ||||| || || || || || Sbjct 14097 TCATGACAAGT-TTTATATTCTGCCCCAAAATGACGCCATTGGAATCCATAGACTGGCCC 14039 Query 20572 CAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATT 20631 ||||||||| || || | | | || | ||| ||| ||||||| || || Sbjct 14038 CAAATCCCCTTCTTCCCTATCAGTAAAACCACATTTATCCAAGAATTCCCTGGTGCTGTT 13979 Query 20632 TTTGTCCCATATCTTGAC-TCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCA 20690 | |||||||| || || | | |||||| || | ||| | ||| || || | Sbjct 13978 TCCATCCCATATTTTCACGTTTTTTTCTTGTAAAAT-TTTGGCATTAGTTTGACCTTTGA 13920 Query 20691 GAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGG 20750 |||||||| || |||| | || |||| ||| || |||| ||||| |||| ||| | Sbjct 13919 TGAACCAAAGAAGTTCTTCTGCAACACCTCTCCAGAATACCCTTTTTGTAGTTAATAATG 13860 Query 20751 GAAAGTGGTCCCGCAGACTATACCT 20775 |||| || || | ||| || |||| Sbjct 13859 GAAACTGATCTCTGAGATTAAACCT 13835 >seq188621 Length=750 Score = 107 bits (118), Expect = 2e-18 Identities = 231/340 (68%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||||| ||||| |||||| | |||||||||||| || || |||||||||||| Sbjct 601 ACATGAGCAATCATATGAGTTAACAAAACATAGCTGGCAATATTGAATGGAACTCCCAAA 542 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || || | || || |||| ||| ||||| || || | |||||||| Sbjct 541 CCCATATCACCAGCTCTTTGGTACAAAGAACAAGAAAGTTCTCCATTTTGAACATAAAAC 482 Query 20366 TG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGC 20424 || ||| ||| | ||||| || ||||| ||||| | | |||| | || ||||| || Sbjct 481 TGTACAAAACTA-TGACATGGTGGAAGGGCCATTTTAGGGATGTCCACAGGATTCCAAGC 423 Query 20425 ACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAA 20484 ||| || ||||| || | ||||| |||| ||| | | | | || Sbjct 422 TGTCATGCAAATCCTTCTGTCATTTGGATTGGTTTTAATTGTGTGGATTACATGGCTTAA 363 Query 20485 TTGGTCAAACCCCTGGCCTGTATAGTCAGCAT-CCGCGTCCACGTACGCCGCCCCAAAGT 20543 ||||||| || | ||| ||||| ||| ||| | || ||| | |||||||| | Sbjct 362 CTGGTCAACGCCTTTGCCAGTATAATCATCATGACAAGT-TTTGTATTCAGCCCCAAAAT 304 Query 20544 GCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 | | ||| || || || || || |||||||| || || || Sbjct 303 GACGCCATTGAAAGCCATATACTGGTCCCAAGTCTCCTTC 264 >seq194783 Length=813 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||||| ||||| |||||| | | |||||||||||| || || |||||||| ||| Sbjct 188 ACATGAGCAATCATATGAGTTAACAAAGCATAGCTGGCAATATTGAATGGAACTCCTAAA 247 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 |||| ||||| | || || |||| ||| |||||||| || | |||||||| Sbjct 248 GCCATATCTCCAGCTCTTTGGTACAAAGAACAAGAAAGCTCTCCATTTTGAACATAAAAC 307 Query 20366 TG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGC 20424 || ||| ||| | ||||| || || || ||||| | | |||| | || ||||| || Sbjct 308 TGTACAAAACTA-TGACATGGTGGGAGGGCCATTTTTGGAATGTCCACAGGATTCCAAGC 366 Query 20425 ACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATT 20464 ||| || ||||| || | ||||| |||| ||| Sbjct 367 TGTCATGCAAATCCTTCTGTCATTTGGATTGGTTTTAATT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440098109836440