Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq80618 156 1e-32
seq160753 145 2e-29
seq229830 136 9e-27
>seq80618
Length=357
Score = 156 bits (172), Expect = 1e-32
Identities = 152/196 (78%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||||| | |||||||| ||||| ||||| ||||| |||||
Sbjct 315 TTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAA 256
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| ||| |||||| ||||||||||||||| || ||||| || || || || ||
Sbjct 255 GATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATT 196
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| || | ||| | ||| ||||| | || || ||||| || |||| |||||||||
Sbjct 195 TTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGAC 136
Query 288462 GAATATCTGCATTATG 288477
||| ||||||||| ||
Sbjct 135 GAAAATCTGCATTCTG 120
>seq160753
Length=592
Score = 145 bits (160), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | |||| || || |||||||| ||||| || |
Sbjct 365 CCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGAT 424
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365
| |||||||| ||||| |||||||| || |||||||||| ||| || ||| |||||
Sbjct 425 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGA---TCTGGA 481
Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||||||||||||||||||| || || || |||||||| || | || | |||
Sbjct 482 GGGATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCA 541
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || ||||| || || || |||| || |||||||| ||||||||
Sbjct 542 ACTTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591
>seq229830
Length=7395
Score = 136 bits (150), Expect = 9e-27
Identities = 148/195 (76%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||||||||| || || || ||| | |||||||| ||||| |||||||| || |||||
Sbjct 5750 TTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAA 5691
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||| ||| || || |||||| |||||||| || ||||| ||||| ||||| ||
Sbjct 5690 GATCAAACGTTGCTGG---TCTGGGGGGATTCCTTCCTTGTCCTGAATTTTAGCTTTAAC 5634
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
||||| |||| |||| | ||| || || | || || || || || |||| ||||||
Sbjct 5633 ATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTGTTTTACCAGTCAAAGTCTT 5574
Query 288459 GACGAATATCTGCAT 288473
|||||| ||||||||
Sbjct 5573 GACGAAAATCTGCAT 5559
Score = 123 bits (136), Expect = 6e-23
Identities = 145/195 (74%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||||||||| || |||||||| | | |||||||||||||| |||||||| || || ||
Sbjct 5978 TTCTTTTTGAATGTTATAGTCTGACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAA 5919
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||| ||| ||||| |||| || || |||||||| || ||||| || || || ||
Sbjct 5918 GATCAAACGTTGTTG---ATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCCTTAAC 5862
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| || | || | || ||||| | ||||| || || || |||| || ||
Sbjct 5861 GTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTT 5802
Query 288459 GACGAATATCTGCAT 288473
|||||| || |||||
Sbjct 5801 GACGAAAATTTGCAT 5787
Score = 111 bits (122), Expect = 4e-19
Identities = 142/195 (73%), Gaps = 7/195 (4%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| ||||||||||| |||||| | ||||| || ||||| |||||||| || || ||
Sbjct 6205 TTCCTTTTGGATATTGTAGTCGCTTAAAGTGCGACCATCTTCCAATTGTTTACCGGCAAA 6146
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||| ||||| ||| |||| || || |||||||| || || || || || || ||
Sbjct 6145 GATGAGACGTTGT----GATCTGGAGGAATACCTTCTTTGTCTTGAATCTTAGCCTTGAC 6090
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| || | || | || ||||| | || || ||||| || |||| ||||||
Sbjct 6089 GTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTT 6030
Query 288459 GACGAATATCTGCAT 288473
|||||| || |||||
Sbjct 6029 GACGAAGATTTGCAT 6015
Score = 95.1 bits (104), Expect = 3e-14
Identities = 99/129 (77%), Gaps = 6/129 (5%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||||||||| || ||||||||| || ||||| || ||||| | || ||||| || ||
Sbjct 130 TTCTTTTTGAATGTTATAGTCGCTAAGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAA 71
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|| ||||||||||| |||| || || ||||| || |||||||| || ||||| ||
Sbjct 70 AATGAGACGCTGTTG---ATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGAC 14
Query 288399 GTTTTCTAT 288407
|||||| ||
Sbjct 13 GTTTTCAAT 5
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1176162371930798
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |