Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq80618 156 1e-32 seq160753 145 2e-29 seq229830 136 9e-27 >seq80618 Length=357 Score = 156 bits (172), Expect = 1e-32 Identities = 152/196 (78%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| | |||||||| ||||| ||||| ||||| ||||| Sbjct 315 TTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAA 256 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| |||||| ||||||||||||||| || ||||| || || || || || Sbjct 255 GATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATT 196 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||| ||||| | || || ||||| || |||| ||||||||| Sbjct 195 TTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGAC 136 Query 288462 GAATATCTGCATTATG 288477 ||| ||||||||| || Sbjct 135 GAAAATCTGCATTCTG 120 >seq160753 Length=592 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| || || |||||||| ||||| || | Sbjct 365 CCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGAT 424 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 | |||||||| ||||| |||||||| || |||||||||| ||| || ||| ||||| Sbjct 425 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGA---TCTGGA 481 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||||||||||||| || || || |||||||| || | || | ||| Sbjct 482 GGGATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCA 541 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || |||| || |||||||| |||||||| Sbjct 542 ACTTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 >seq229830 Length=7395 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || || ||| | |||||||| ||||| |||||||| || ||||| Sbjct 5750 TTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAA 5691 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| || || |||||| |||||||| || ||||| ||||| ||||| || Sbjct 5690 GATCAAACGTTGCTGG---TCTGGGGGGATTCCTTCCTTGTCCTGAATTTTAGCTTTAAC 5634 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| |||| |||| | ||| || || | || || || || || |||| |||||| Sbjct 5633 ATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTGTTTTACCAGTCAAAGTCTT 5574 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 5573 GACGAAAATCTGCAT 5559 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | | |||||||||||||| |||||||| || || || Sbjct 5978 TTCTTTTTGAATGTTATAGTCTGACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAA 5919 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| ||||| |||| || || |||||||| || ||||| || || || || Sbjct 5918 GATCAAACGTTGTTG---ATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCCTTAAC 5862 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || | || ||||| | ||||| || || || |||| || || Sbjct 5861 GTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTT 5802 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 5801 GACGAAAATTTGCAT 5787 Score = 111 bits (122), Expect = 4e-19 Identities = 142/195 (73%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| |||||| | ||||| || ||||| |||||||| || || || Sbjct 6205 TTCCTTTTGGATATTGTAGTCGCTTAAAGTGCGACCATCTTCCAATTGTTTACCGGCAAA 6146 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| ||| |||| || || |||||||| || || || || || || || Sbjct 6145 GATGAGACGTTGT----GATCTGGAGGAATACCTTCTTTGTCTTGAATCTTAGCCTTGAC 6090 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || | || ||||| | || || ||||| || |||| |||||| Sbjct 6089 GTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTT 6030 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 6029 GACGAAGATTTGCAT 6015 Score = 95.1 bits (104), Expect = 3e-14 Identities = 99/129 (77%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||||||| || ||||| || ||||| | || ||||| || || Sbjct 130 TTCTTTTTGAATGTTATAGTCGCTAAGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAA 71 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || ||||||||||| |||| || || ||||| || |||||||| || ||||| || Sbjct 70 AATGAGACGCTGTTG---ATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGAC 14 Query 288399 GTTTTCTAT 288407 |||||| || Sbjct 13 GTTTTCAAT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176162371930798