Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq229830 116 4e-21 seq54449 116 4e-21 seq80618 98.7 1e-15 seq160753 93.3 4e-14 >seq229830 Length=7395 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || ||||||||||||||||| || |||| | ||||| ||||||| Sbjct 5995 ACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGTCCGTCTTCC 5936 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || ||||| ||| | || | || || || || |||||||| |||||||| ||||| Sbjct 5935 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 5876 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| || || | ||| ||| | || ||||| | || | ||| || Sbjct 5875 ATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATGGTTTTT 5816 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||| |||||||||||||| Sbjct 5815 CCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACG-GTGCGCGCGTCTTCAAGCTGCTTGCC 64305 || ||||||||||||||||| || || || | | ||||| | ||||| |||||||| || Sbjct 135 GTAGATTCTTTTTGAATGTTATAGTC-GCTAAGAGTGCGGCCATCTTCGAGCTGCTTTCC 77 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||| ||||||| ||||| || || |||||||| ||||| || || || || || Sbjct 76 GGCAAAAATGAGACGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 23 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||||||||||||||| | ||||| | ||||| | || Sbjct 5761 TGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCATCTTCCAATTGT 5702 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || | || | || |||||||| || || |||||||| || || || | |||| Sbjct 5701 TTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTG-AATTTT 5643 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | ||||| | || || || | || | || || || || Sbjct 5642 AGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTGTTTTACCAGT 5583 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || |||||||| ||||| || Sbjct 5582 CAAAGTCTTGACGAAAATCTGCATATT 5556 >seq54449 Length=2482 Score = 116 bits (128), Expect = 4e-21 Identities = 347/529 (66%), Gaps = 21/529 (4%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || || || || |||||||| ||||| || | | | || | || ||||| | ||| Sbjct 1291 GAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAG 1350 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | |||||| || ||| || || | |||| ||||| || ||||||| || ||| Sbjct 1351 AGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCT 1410 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 |||||||| || || || || || ||||| ||||| | |||||||||| | | |||| Sbjct 1411 TTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTG--CATACCAGA 1468 Query 154767 CTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTC----TCATATTGTTCGTAC 154820 || | || | | || | || | | ||||| || ||||| | || Sbjct 1469 GTTGTTGAGCTTTTATTTTCCT-GT---TTGCTTTTCCTTCATTTTCATACTTAATATAG 1524 Query 154821 AGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATC 154880 ||||| ||||| ||| || | || || ||| |||||||| || |||||||| Sbjct 1525 AGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATA 1584 Query 154881 AATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCG 154940 | ||||| ||||| | || ||||||||||||||||| || | ||| |||||| Sbjct 1585 AGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCG 1644 Query 154941 TACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAA 155000 || || | ||| | || || ||||| || ||||| ||| |||| |||||| Sbjct 1645 TAGAAAAGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAAT 1704 Query 155001 TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGC-----GCCT-TTGCGT 155054 ||| | || || | ||||| || || ||||| | || | || |||| ||| Sbjct 1705 TCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTG--- 1761 Query 155055 TTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACA 155103 || ||||||||||| || | || || ||||||| | || | |||| Sbjct 1762 TTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACA 1810 >seq80618 Length=357 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| |||||||| || | | |||||| | ||||| | ||| Sbjct 326 TGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCAATTGC 267 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || | || || || || || || ||||||||||| ||||| || || Sbjct 266 TTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTG 207 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || || | || ||||| | || | |||||| || ||| Sbjct 206 GCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTCTTACCAGTC 147 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 ||||| || |||||||| |||||| Sbjct 146 AAAGTCTTGACGAAAATCTGCATT 123 >seq160753 Length=592 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || || || ||||||||||| ||||||| | ||||| | ||||| | ||| Sbjct 160 ATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCATCTTCCAACTG 219 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| ||||| | || | || || || || ||||| || ||||| || ||||| || || Sbjct 220 CTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCTTGAATCTT 279 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || ||| | || || | || ||||| | || | || || || || Sbjct 280 AGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATAGTTTTTCCAGT 339 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| |||||||| ||||| Sbjct 340 CAAAGTTTTGACGAAAATCTGCAT 363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || ||||| ||||| ||||||| | ||||| | ||||| | || Sbjct 389 TGAAGAGTTGACTCCTTTTGGATGTTATAATCTGATAATGTGCGTCCATCTTCCAATTGT 448 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || | || | || ||||| || ||||| ||||||||||| || || || || Sbjct 449 TTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTTATCCTGGATCTTA 508 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | ||| ||| | || ||||| | || | || ||||| ||| Sbjct 509 GCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGATAGTTTTGCCAGTC 568 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||| || ||||| Sbjct 569 AAGGTTTTGACGAAGATCTGCAT 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498201819572040