Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq229830 172 4e-38
seq80618 123 2e-23
seq193759 87.8 1e-12
seq160753 86.0 4e-12
>seq229830
Length=7395
Score = 172 bits (190), Expect = 4e-38
Identities = 169/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
|| || || |||||||| || |||||||| |||||||||||||| | | | | | |||
Sbjct 5770 AATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCATCT 5711
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| ||||||||||||||| | |||||||| || ||||| || ||||||||||||||
Sbjct 5710 TCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCC 5651
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
|||||| ||| ||| |||| ||||||||| ||| || || |||||||| |||
Sbjct 5650 TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTGTT 5591
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182
||||| |||| ||| || || ||||| |||||||| ||
Sbjct 5590 TTACCAGTCAAAGTCTTGACGAAAATCTGCATATTGGA 5553
Score = 123 bits (136), Expect = 2e-23
Identities = 158/216 (73%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CG 15021
||| |||||||| || ||||| |||||||| ||||| || || ||| ||| || ||
Sbjct 5999 TAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTC--TGACAATGTGCGTCCG 5942
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
||||| |||||||||||||| | |||||||| ||||| || ||||| ||||| |||
Sbjct 5941 TCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 5882
Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141
|| || ||| || || |||| || || || | || || || || || |||
Sbjct 5881 TCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATG 5822
Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||| || |||| ||||| || ||||||||||||
Sbjct 5821 GTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCATA 5786
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/211 (69%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || ||||| ||||| || ||||| || ||||| ||||| | | | | | |||||
Sbjct 6223 AACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAGTGCGACCATCTTC 6164
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
|||||||| || || | || | ||| ||| | || ||||| ||||| |||||
Sbjct 6163 CAATTGTTTACCGGCAAAGATGAGACGTTGT-GATCTGGAGGAATACCTTCTTTGTCTTG 6105
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||| || || || |||| || || || || || ||||||||||| || ||
Sbjct 6104 AATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCTT 6045
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| |||| ||| || || || |||||||||
Sbjct 6044 TCCAGTCAAAGTCTTGACGAAGATTTGCATA 6014
>seq80618
Length=357
Score = 123 bits (136), Expect = 2e-23
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022
|| || || ||||||||||| || ||||| |||||||| ||| || || || | |
Sbjct 335 AACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGTCCAT 278
Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082
|||| ||||| || || ||| | |||||||| ||||| || ||| |||||||| ||||
Sbjct 277 CTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGT 218
Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142
| || ||| || ||| |||| || || ||| | ||| || || ||||||||||
Sbjct 217 CTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGG 158
Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| ||||| |||| ||| || || ||||| |||||
Sbjct 157 TCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124
>seq193759
Length=801
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048
||||| || ||||||| | ||| | | | | || ||||| |||||||| | |||
Sbjct 363 TTTTGGATATTGTAATTGGAAAGAGTACGGCCATATTTAAATTGCTTGCCAGCAAAGATC 304
Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108
| | ||||| || |||||||| || ||||| ||| ||| | | ||| | ||
Sbjct 303 CATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTGGCTATAACATTCTCG 244
Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168
|||||| | | |||| | || |||||||||||||||| | || ||||||||||||
Sbjct 243 ATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTTACAGATAAGGGTTTTTACAAAA 185
Query 15169 ATTTGCATATTTGAAATAAATTTTTTAATACTTATAAGA 15207
||||| || | || | || |||| ||||||| ||||
Sbjct 184 ATTTGAAT-TCTGTA--AACTTTTGAAATACTTTGAAGA 149
>seq160753
Length=592
Score = 86.0 bits (94), Expect = 4e-12
Identities = 149/215 (69%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022
|| || ||||||||||| || || ||||| ||||| |||| |||| ||| || | |
Sbjct 152 AATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAAT--CTGACAATGTGCGTCCAT 209
Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082
|||| || || || || ||| | |||||||| ||||| || || || |||||||| |
Sbjct 210 CTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTAT 269
Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142
| ||| || || || | || || || || || || || | ||| || |
Sbjct 270 CTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATAG 329
Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|||| || |||| |||||| || ||||| ||||||
Sbjct 330 TTTTTCCAGTCAAAGTTTTGACGAAAATCTGCATA 364
Score = 86.0 bits (94), Expect = 4e-12
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024
||| || ||||| || || || ||||| ||||| ||||| ||| ||| || | |||
Sbjct 382 AACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATC--TGATAATGTGCGTCCATCT 439
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| ||||||||||||||| | |||||||| || || || || |||||||| || ||
Sbjct 440 TCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTTATCC 499
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
|| || || || |||| || || || ||| || || | ||| || |||
Sbjct 500 TGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGATAGTT 559
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || |||| ||||| || || || ||||||
Sbjct 560 TTGCCAGTCAAGGTTTTGACGAAGATCTGCATA 592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356385651250685
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |