Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq54449 199 4e-46 seq160753 120 3e-22 seq80618 118 1e-21 seq229830 113 4e-20 >seq54449 Length=2482 Score = 199 bits (220), Expect = 4e-46 Identities = 557/855 (65%), Gaps = 0/855 (0%) Strand=Plus/Minus Query 123816 ACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAG 123875 ||||||| | || | ||||| |||||||| || |||||||||| |||||| ||| Sbjct 1122 ACAAAAATTATAACCAGAAATTTAAACAAAATAATAGATGTTAATTATTATCCATTGCCT 1063 Query 123876 GAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCC 123935 ||||| | ||| ||||| ||||| || |||| | || | ||||| || | Sbjct 1062 GAAGCTAGAAAGTCAAATTTACGTCACAGGCCTATCGGGATCGGTGTACAAGGTTTCTCT 1003 Query 123936 GACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACG 123995 || || || | | |||| || |||||||| || | || ||||||||||| | Sbjct 1002 GATGCTTTGATTCTTATGCGTTATCCTTACGAAAGTGAAAAGGCTCAGTTGCTTAATCAG 943 Query 123996 CAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATT 124055 |||||| || ||||||||||| || ||| | || || || || |||||||| ||| Sbjct 942 CAAATATTTGAGACAATTTATTATGGAGCTCTTGAAGCAAGTTGTGAACTTGCTGAAAAA 883 Query 124056 CACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGAC 124115 | || | || |||| || | ||| ||||| | ||| ||| || || || || || Sbjct 882 GAGGGTACTTATGAAACATATGAGGGAAGCCCAGTTAGCAAAGGAATCTTACAATATGAT 823 Query 124116 ATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG 124175 |||||| | || || || |||||||||| ||| | | |||| | ||| | Sbjct 822 ATGTGGGACAAAACCCCAACTGATTTGTGGGATTGGCAAGCTCTAAAGGATAAAATAAAG 763 Query 124176 ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAA 124235 || || | | || || | ||| | || ||||| || || | ||||||||| Sbjct 762 GTTCATGGAGTAAGAAATTCATTATTGATTGCACCAATGCCAACTGCTTCAACTGCTCAA 703 Query 124236 ATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTG 124295 ||||| |||||||| ||||| ||||| || | ||| ||| | || || ||||| Sbjct 702 ATTTTGGGAAACAATGAATCATTCGAACCATATACTTCAAATATTTATAACCGTCGAGTA 643 Query 124296 TTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAAT 124355 ||| | || || || ||||| |||| || |||||| | | ||||| | | | || Sbjct 642 TTATCTGGTGAGTTCCAAGTTGTAAACCACCATTTGCTCAAGGACTTAACAGAGCTTGAT 583 Query 124356 TTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATC 124415 || | || || | ||| |||||||||||| | |||| | || ||| Sbjct 582 TTATGGGACGATGATATGAAAAACGAAATTATTTCAAAACGTGGTTCTATACAAGAAATC 523 Query 124416 GCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAA 124475 | ||||| | ||| ||| |||| || ||||| || |||||||| | |||| Sbjct 522 GAAAGAATTCCAGCACATATCAGAGAACTTTATAAAACTGTTTGGGAAATATCCATTAAA 463 Query 124476 CGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAAC 124535 |||| ||||||| | || |||| || | | ||||||||||| || || || Sbjct 462 TCTACAATTCAAATGGCTGCTGATAGAGGTGCTTTTATTGATCAAAGTCAGTCATTCAAT 403 Query 124536 GTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGC 124595 | |||||| ||||| | ||| | | || || || | |||| |||| Sbjct 402 ATTCATGTAGCAGAACCAAACTATGGAAAATTAACTTCAATGCATTTCTACGCTTGGAAA 343 Query 124596 AGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAA 124655 || || ||||| || ||||| || ||| | || ||||| || ||| |||| || ||| Sbjct 342 TTGGGTCTGAAAACAGGAATGTACTATTTACGTACAAAACCCGCTGCCAATGCTATACAA 283 Query 124656 TTTACCGTCGACAAA 124670 || || || |||||| Sbjct 282 TTCACTGTTGACAAA 268 Score = 102 bits (112), Expect = 7e-17 Identities = 302/462 (65%), Gaps = 14/462 (3%) Strand=Plus/Minus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAAC 123362 || || ||| | ||||| ||||| ||| | | || ||||| |||| || ||| Sbjct 1742 GCAATTTATTTGGAACCTTGGCATTCAGATATTTTTGAATTTTTGGATTTGAAGAAAAAC 1683 Query 123363 ATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTG 123422 | || ||||| || ||| | ||| | || |||||||||||| | || |||||| Sbjct 1682 ACAGGAAAAGAAGAGAACCGAGCTAGAGATCTTTTCTACGCTTTATGGATTCCAGATTTG 1623 Query 123423 TTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCC 123482 |||||| ||| || | | |||| | ||||| || |||||||| | |||||| Sbjct 1622 TTTATGAAACGTGTTGAGGCTGACGAAGATTGGTCTCTTATGTGTCCTCACAAATGTCCC 1563 Query 123483 GGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAA 123542 || ||| ||| |||| || | | ||||| | | || | || || ||| Sbjct 1562 GGATTGCACGATGTTTGGGGTGAAGAATTTGAGAAACTCTATATTAAGTATGAAAATGAA 1503 Query 123543 GG-----CAAACAGGTTAGTCAG-GTTCCGGCACG-TGATTTGTTCAAATTTATTATCGA 123595 || |||||||| | | | | || || || | || ||| |||| || Sbjct 1502 GGAAAAGCAAACAGGAAAATAAAAGCTCAACAACTCTGGTATG--CAA-----TTATTGA 1450 Query 123596 AACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAAC 123655 ||||||| ||||| ||||| || || ||| | |||||||| || |||||||| || | Sbjct 1449 GTCACAAGTAGAAACTGGAACTCCATATATGTTGTACAAAGATGCTTGCAACAGAAAGAG 1390 Query 123656 CAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 ||||| || | || ||||| || ||||||||||| ||| | ||||| | || || Sbjct 1389 TAATCAACAAAATGTTGGTACAATTAAGTGTAGTAATCTCTGCACTGAAATCGTAGAGTA 1330 Query 123716 CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | | ||| || | ||||| |||||||| ||||| || Sbjct 1329 TTCTGCTCCAGATGAAATCGCCGTTTGTAATTTAGCTTCCAT 1288 >seq160753 Length=592 Score = 120 bits (132), Expect = 3e-22 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || | ||| || ||||| |||||||| || |||||||| Sbjct 134 ATACCACCACGGAGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATC- 192 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| | | | ||| ||||| || ||||| ||| | ||||| ||||| || || | Sbjct 193 -TGACAATGTGCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTG 251 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || || ||||| |||||||||| | || | | | || | || | |||||| || | | Sbjct 252 GAGGGATACCTTCCTTATCTTGAA-TCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGC 310 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || | ||||| || || | |||||| || ||||| ||||| Sbjct 311 TCAACTTCAAGGGTGATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || ||||| ||||||||||| |||||||| ||| | | | ||| ||||||| Sbjct 389 TGAAGAGTTGACTCCTTTTGGATGTTATAATC--TGATAATGTGCGTCCATCTTCCAATT 446 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || ||| | ||||| |||||||| || || || || ||||||||||| || || | Sbjct 447 GTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTTATCCTGGATCT 506 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | |||| ||| | ||||| || | || ||||| || || | |||||||| | Sbjct 507 TAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGATAGTTTTGCCAG 566 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | | ||||| || || || ||||| Sbjct 567 TCAAGGTTTTGACGAAGATCTGCAT 591 >seq80618 Length=357 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | || || || |||||||||||||| || || ||| Sbjct 353 ATACCACCACGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCG 294 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||||||| ||||| ||| | ||||| ||||| || || || Sbjct 293 GACAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGT 234 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || |||| ||| | ||||||||||| || Sbjct 233 GGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCA 174 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || || || || | ||| || || ||||| ||||| Sbjct 173 ACTTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124 >seq229830 Length=7395 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| || | || || |||||||| ||||| || || |||||| Sbjct 5788 ATACCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCG 5729 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || ||| ||||||||||| || ||| | ||||| ||||||||||| || Sbjct 5728 CTCAAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGG 5669 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || |||||||| ||| | ||| | || ||||| | || Sbjct 5668 GGGATTCCTTCCTTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 5609 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| || || | ||| || || ||||| ||||| Sbjct 5608 ACCTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 5559 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | || |||| ||| || || ||||| ||||| || ||||| || Sbjct 6016 ATACCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTC- 5958 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| | | | || ||||||||||| || || | ||||| ||||| || || | Sbjct 5957 -TGACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTG 5899 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| |||||||| ||||| || || || | ||| | ||||| |||| || Sbjct 5898 GAGGAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCT 5839 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | || | ||||| || || | ||||| || ||||||||||| Sbjct 5838 CAACTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 Score = 102 bits (112), Expect = 7e-17 Identities = 145/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||||||||| || ||||| | || | ||| ||||||||| Sbjct 6216 TGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAGTGCGACCATCTTCCAATTGT 6157 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||| || || || ||||| |||||||| |||||||| || Sbjct 6156 TTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGAATACCTTCTTTGTCTTGAATCTTA 6098 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||| || | ||| ||||| | |||| || || || || Sbjct 6097 GCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCTTTCCAGTC 6038 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || || |||||||| Sbjct 6037 AAAGTCTTGACGAAGATTTGCAT 6015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450697809108360